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NVIDIA Parabricks
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NVIDIA
NVIDIA
NVIDIA Parabricks

NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

NVIDIA AI Enterprise Supported
LayerLabelCreated
65b57cf1b8a0a91570ee9d4ea79072717276f9810feb7f44840abf84e2b16a8bCONFIG
—
06/05/2025 4:40 PM UTC
dcf218f7285eff3594b1f33593065cbe9f4a63bce1e4bd15ed09cd6145f84281RUN
if test -e /usr/local/parabricks/binaries/bin/collectmultiplemetrics ; then python3 -m pip install matplotlib ; fi
06/05/2025 4:40 PM UTC
cbb41bc3e1ea9b4327ef9d4045ef12020e5b51179c075de052447072f86b7426RUN
if test -e /usr/local/parabricks/TiedHash.pm ; then mv /usr/local/parabricks/TiedHash.pm /etc/perl/ ; fi
06/05/2025 4:40 PM UTC
88834fe73ec55f6952466d43cbc589d251f753a395434067bda1232b383cd1dcADD
parabricks/ /usr/local/parabricks/
06/05/2025 4:40 PM UTC
7a4763e21465b67813e7b32951f7e1ac4d54777da05128fc487afb95adf72021ENTRYPOINT
—
06/05/2025 4:40 PM UTC
a3fd7a4f04fb9ebda980669c7d24090a3a67821b841738ad9bec6f634aa0260dENV
CUFILE_LOGFILE_PATH=/tmp/cufile.log
06/05/2025 4:40 PM UTC
c463097c22d6a34546a5b0822fc153f4861a6b24572c4e6aec124bc987e21aaeENV
PATH=/usr/local/parabricks:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06/05/2025 4:40 PM UTC
4b0ef9adc9aeb68aff3be910e29e895ce36f4c4fe37f5e5e2af02120e481b33cRUN
CUDA_PACKAGE=-12-9 apt update &&
  apt update --fix-missing &&
  apt -y upgrade
06/05/2025 4:40 PM UTC
98bad8486f4e1bee1da64def09c0f45c3bd19d3ed9f7278790b04207c0e031a5RUN
CUDA_PACKAGE=-12-9 DEBIAN_FRONTEND=noninteractive apt install --no-install-recommends -y bcftools gds-tools$CUDA_PACKAGE libboost-filesystem-dev libboost-iostreams-dev libboost-program-options-dev libboost-system-dev libbz2-1.0 libcufile-dev$CUDA_PACKAGE libgomp1 libisal2 libjemalloc-dev liblzma5 libtcmalloc-minimal4 perl python3 python3-distlib python3-pip samtools zlib1g libprotobuf-dev
06/05/2025 4:40 PM UTC
4ce837440ca5f006e479248d9bd1c00517bf516133d78c60cc1ddf71a74bcdeaRUN
CUDA_PACKAGE=-12-9 apt update &&
  apt update --fix-missing
06/05/2025 4:39 PM UTC