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  • NVIDIA
    NVIDIA Parabricks
    Container
    NVIDIA
    NVIDIA Parabricks

    NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    —
    		12/08/2023 6:18 AM UTC
    sha256:f9ec864b2604f0dd5fff2b28e7964824b5c2ef7dcd95090ecfd5a21741bd4471RUN
    if test -e /usr/local/parabricks/binaries/bin/collectmultiplemetrics ; then python3 -m pip install matplotlib ; fi
    		12/08/2023 6:18 AM UTC
    sha256:c071e943c68e8956b89d03a701566b94009d2dab24b53e8f368955816c842f48RUN
    if test -e /usr/local/parabricks/TiedHash.pm ; then mv /usr/local/parabricks/TiedHash.pm /etc/perl/ ; fi
    		12/08/2023 6:17 AM UTC
    sha256:2c5c140ca546e65fcd492692bd871f418b8f2a725b10a5d308ebaca3cc6f1d00ADD
    parabricks/ /usr/local/parabricks/
    		12/08/2023 6:17 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    —
    		12/08/2023 6:17 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    CUFILE_LOGFILE_PATH=/tmp/cufile.log
    		12/08/2023 6:17 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    PATH=/usr/local/parabricks:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
    		12/08/2023 6:17 AM UTC
    sha256:50f86d87e968002b59691212b67af862c695e5df1df7c6546fcfe0526d27a19dRUN
    APT_CUDA_VERSION=-12-2 apt update &&
  apt update --fix-missing &&
  apt -y upgrade
    		12/08/2023 6:17 AM UTC
    sha256:f2d69e1b2332faa928e5c6857ea1a842c36caddd1c30327be54e9da977b91ca5RUN
    APT_CUDA_VERSION=-12-2 DEBIAN_FRONTEND=noninteractive apt install --no-install-recommends -y python3 python3-distlib python3-pip zlib1g libboost-filesystem1.71.0 libboost-program-options1.71.0 libboost-iostreams1.71.0 libboost-system1.71.0 libbz2-1.0 libtcmalloc-minimal4 libisal2 nvidia-gds$APT_CUDA_VERSION samtools liblzma5 python3 perl libgomp1
    		12/08/2023 6:17 AM UTC
    sha256:a20a482305c13778c8ed44bfaab044bc8bb26d28b7e3290dcde4774ba1aacec5RUN
    APT_CUDA_VERSION=-12-2 apt update &&
  apt update --fix-missing
    		12/08/2023 6:16 AM UTC