/parabricks/run_pipeline.py

PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/miniconda/bin

/mnt/disk/dnabricks/pydeps/package/docker-script.sh /mnt/disk/dnabricks /usr/local/cuda

CUDA_VER=10.1 OS_DIST=ubuntu18.04 apt update &&
  apt -y upgrade

CUDA_VER=10.1 OS_DIST=ubuntu18.04 rm -f /etc/apt/sources.list.d/cuda.list /etc/apt/sources.list.d/nvidia-ml.list &&
  wget https://developer.download.nvidia.com/compute/cuda/repos/$(echo $OS_DIST | tr -d '.')/${ARCH}/cuda-keyring_1.0-1_all.deb &&
  dpkg -i ./cuda-keyring_1.0-1_all.deb

CUDA_VER=10.1 OS_DIST=ubuntu18.04 apt update; apt install -y wget

CUDA_VER=10.1 OS_DIST=ubuntu18.04 rm -rf /var/lib/apt/lists/*

ARCH=x86_64

OS_DIST

CUDA_VER