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NVIDIA Parabricks
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NVIDIA
NVIDIA
NVIDIA Parabricks

NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

NVIDIA AI Enterprise Supported
LayerLabelCreated
a3d343643eece392dac243ad5b8ee694b4ef405b1537880b7b51f78849f39430CONFIG
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03/07/2025 5:22 PM UTC
2f09f3e458eb002046673945dcb8549b3bbeedd204275062e5bc38494814dabdRUN
if test -e /usr/local/parabricks/binaries/bin/collectmultiplemetrics ; then python3 -m pip install matplotlib ; fi
03/07/2025 5:22 PM UTC
e5dd84bbb0e31d548ad22590329bfd56681007ace72ca52b24a8c8c922e2c359RUN
if test -e /usr/local/parabricks/TiedHash.pm ; then mv /usr/local/parabricks/TiedHash.pm /etc/perl/ ; fi
03/07/2025 5:22 PM UTC
a26be340d395473a9c34687babf24bc08e9476afb04520521d3c134dd3d6c8a5ADD
parabricks/ /usr/local/parabricks/
03/07/2025 5:22 PM UTC
5ae399b6a23920b618a53bbd075ef94f34359e0627162f3fa6ecad1613de522cENTRYPOINT
—
03/07/2025 5:22 PM UTC
6dac8f503b0a563b316d3abfadea0e33ffa9002a5c5a0fea8b2abe36c2caa830ENV
CUFILE_LOGFILE_PATH=/tmp/cufile.log
03/07/2025 5:22 PM UTC
18163bc18222b25adfa2974a1c88bdb1d2f1b23f15d6bd8469329720cd96f39eENV
PATH=/usr/local/parabricks:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
03/07/2025 5:22 PM UTC
326fb78313c3e5600bb381768b1d3881cd762d83b5a35c311741128745d7dac9RUN
CUDA_PACKAGE=-12-8 apt update &&
  apt update --fix-missing &&
  apt -y upgrade
03/07/2025 5:22 PM UTC
ec380ed5839ece34d24a81532aef5a72d5edc85f64320d3be7684af975e15ce4RUN
CUDA_PACKAGE=-12-8 DEBIAN_FRONTEND=noninteractive apt install --no-install-recommends -y bcftools gds-tools$CUDA_PACKAGE libboost-filesystem-dev libboost-iostreams-dev libboost-program-options-dev libboost-system-dev libbz2-1.0 libcufile-dev$CUDA_PACKAGE libgomp1 libisal2 libjemalloc-dev liblzma5 libtcmalloc-minimal4 perl python3 python3-distlib python3-pip samtools zlib1g libprotobuf-dev
03/07/2025 5:22 PM UTC
5f872717d6aa75b9d6417ddaa2313398cde42c04e9c294912d3146b20ab7af5fRUN
CUDA_PACKAGE=-12-8 apt update &&
  apt update --fix-missing
03/07/2025 5:22 PM UTC