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  • NVIDIA
    NVIDIA Parabricks
    Container
    NVIDIA
    NVIDIA Parabricks

    NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    —
    		03/07/2025 5:22 PM UTC
    sha256:730f06781f2992b521f6758889bf26f7fe009ae15032ccbfb0827fd8c1be7ea6RUN
    if test -e /usr/local/parabricks/binaries/bin/collectmultiplemetrics ; then python3 -m pip install matplotlib ; fi
    		03/07/2025 5:22 PM UTC
    sha256:fb46be9d9309eb9861f872b7e96c35130c817a3e0f80e4c9a552a82bd3881e60RUN
    if test -e /usr/local/parabricks/TiedHash.pm ; then mv /usr/local/parabricks/TiedHash.pm /etc/perl/ ; fi
    		03/07/2025 5:22 PM UTC
    sha256:0176ce990ffcf3e5d2d0d6209eb11f885721073b19ba95b80bdd7e605c8a5d30ADD
    parabricks/ /usr/local/parabricks/
    		03/07/2025 5:22 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    —
    		03/07/2025 5:22 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    CUFILE_LOGFILE_PATH=/tmp/cufile.log
    		03/07/2025 5:22 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    PATH=/usr/local/parabricks:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
    		03/07/2025 5:22 PM UTC
    sha256:09bda95edc9162d665f24ba0a723151dd100161730dda45002cd51a4f15e54ffRUN
    CUDA_PACKAGE=-12-8 apt update &&
  apt update --fix-missing &&
  apt -y upgrade
    		03/07/2025 5:22 PM UTC
    sha256:a987f8be8858d2fda46ccf514d3b24856a7cb97fcaac722c45dc7f00d5f0f025RUN
    CUDA_PACKAGE=-12-8 DEBIAN_FRONTEND=noninteractive apt install --no-install-recommends -y bcftools gds-tools$CUDA_PACKAGE libboost-filesystem-dev libboost-iostreams-dev libboost-program-options-dev libboost-system-dev libbz2-1.0 libcufile-dev$CUDA_PACKAGE libgomp1 libisal2 libjemalloc-dev liblzma5 libtcmalloc-minimal4 perl python3 python3-distlib python3-pip samtools zlib1g libprotobuf-dev
    		03/07/2025 5:22 PM UTC
    sha256:48d5a5fe08f1a58b8a8c896d1fe0a434aa52fbbb63144e65cc9483fb3afcdec4RUN
    CUDA_PACKAGE=-12-8 apt update &&
  apt update --fix-missing
    		03/07/2025 5:22 PM UTC

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