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NVIDIA
NVIDIA Parabricks
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NVIDIA
NVIDIA
NVIDIA Parabricks

NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

NVIDIA AI Enterprise Supported
LayerLabelCreated
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
—
03/07/2025 5:22 PM UTC
sha256:730f06781f2992b521f6758889bf26f7fe009ae15032ccbfb0827fd8c1be7ea6RUN
if test -e /usr/local/parabricks/binaries/bin/collectmultiplemetrics ; then python3 -m pip install matplotlib ; fi
03/07/2025 5:22 PM UTC
sha256:fb46be9d9309eb9861f872b7e96c35130c817a3e0f80e4c9a552a82bd3881e60RUN
if test -e /usr/local/parabricks/TiedHash.pm ; then mv /usr/local/parabricks/TiedHash.pm /etc/perl/ ; fi
03/07/2025 5:22 PM UTC
sha256:0176ce990ffcf3e5d2d0d6209eb11f885721073b19ba95b80bdd7e605c8a5d30ADD
parabricks/ /usr/local/parabricks/
03/07/2025 5:22 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
—
03/07/2025 5:22 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
CUFILE_LOGFILE_PATH=/tmp/cufile.log
03/07/2025 5:22 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
PATH=/usr/local/parabricks:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
03/07/2025 5:22 PM UTC
sha256:09bda95edc9162d665f24ba0a723151dd100161730dda45002cd51a4f15e54ffRUN
CUDA_PACKAGE=-12-8 apt update &&
  apt update --fix-missing &&
  apt -y upgrade
03/07/2025 5:22 PM UTC
sha256:a987f8be8858d2fda46ccf514d3b24856a7cb97fcaac722c45dc7f00d5f0f025RUN
CUDA_PACKAGE=-12-8 DEBIAN_FRONTEND=noninteractive apt install --no-install-recommends -y bcftools gds-tools$CUDA_PACKAGE libboost-filesystem-dev libboost-iostreams-dev libboost-program-options-dev libboost-system-dev libbz2-1.0 libcufile-dev$CUDA_PACKAGE libgomp1 libisal2 libjemalloc-dev liblzma5 libtcmalloc-minimal4 perl python3 python3-distlib python3-pip samtools zlib1g libprotobuf-dev
03/07/2025 5:22 PM UTC
sha256:48d5a5fe08f1a58b8a8c896d1fe0a434aa52fbbb63144e65cc9483fb3afcdec4RUN
CUDA_PACKAGE=-12-8 apt update &&
  apt update --fix-missing
03/07/2025 5:22 PM UTC