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NVIDIA Parabricks
Container
NVIDIA
NVIDIA
NVIDIA Parabricks

NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

NVIDIA AI Enterprise Supported
LayerLabelCreated
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4CONFIG
—
—
b5264630653098fb44b583c1e7bd68158712834cd83aeae9f0e6fefb67f1b4a1RUN
apt update &&
  apt update --fix-missing &&
  apt -y upgrade
11/22/2022 3:23 PM UTC
eaa776abf41bb389e570bf3e3871946c0419b3fdb61f2984195fb26ad6be8013RUN
/bin/bash -c apt-get update; apt-get install -y --no-install-recommends ./debian_package/artifact_folder_core/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bam2fq/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_mutectcaller/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_collectmultiplemetrics/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bqsr/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bammetrics/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_genotypegvcf/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_dbsnp/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_starfusion/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_postpon/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_prepon/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_indexgvcf/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_applybqsr/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_fq2bam/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_rna-fq2bam/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_haplotypecaller/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bamsort/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_deepvariant/*.deb; dpkg -l | grep parabricks; apt-get install -y --no-install-recommends python3-pip; python3 -m pip install matplotlib;
11/22/2022 3:23 PM UTC
833844d6da6f92370c2a9208f51488aba82d2f7b05bdc807417a886f4f3782dcENV
NVIDIA_DRIVER_CAPABILITIES=compute,utility
10/27/2022 10:55 PM UTC
785f1151023ad54a08fe204b7e09d23f628e7e8cfe66970cc0bb127b5d821999ENV
NVIDIA_VISIBLE_DEVICES=all
10/27/2022 10:55 PM UTC
0cd61a3c7481cfc73bbf3fc05d0664bf57116b72417ebcd2efe340367f24b500COPY
NGC-DL-CONTAINER-LICENSE /
10/27/2022 10:55 PM UTC
ca516f4b1e3f71151602dc08c5d51f3d811fab50ebe770f18777ebfe015e0af1ENV
LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64
10/27/2022 10:55 PM UTC
b73047ab7ca3b22d8fae4ad85e6d43362bcce5b5606c8bba7cb66727ca1df9d1ENV
PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10/27/2022 10:55 PM UTC
9cb0a119f3e30ae1b8b48bb50399b34860ddb2b80ed2954e8488efda2bf15033RUN
TARGETARCH=amd64 echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
  echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf
10/27/2022 10:55 PM UTC
1363617b23e7399cd6b8dc04197286affc54961947f1932616a4f81ec3545841RUN
TARGETARCH=amd64 apt-get update &&
  apt-get install -y --no-install-recommends cuda-cudart-11-7=${NV_CUDA_CUDART_VERSION} ${NV_CUDA_COMPAT_PACKAGE} &&
  ln -s cuda-11.7 /usr/local/cuda &&
  rm -rf /var/lib/apt/lists/*
10/27/2022 10:55 PM UTC

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