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NVIDIA Parabricks
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NVIDIA
NVIDIA Parabricks

NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

LayerLabelCreated
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
—
11/22/2022 3:23 PM UTC
sha256:8821bb3e5a15228e8c86baa45dfecab88ab94304664873e66dc4393c83e57252RUN
apt update &&
  apt update --fix-missing &&
  apt -y upgrade
11/22/2022 3:23 PM UTC
sha256:7b27cc0e5494da684e91a38a7d7b69d40209c9dce7ce15fb6c5c587064e82837RUN
/bin/bash -c apt-get update; apt-get install -y --no-install-recommends ./debian_package/artifact_folder_core/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bam2fq/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_mutectcaller/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_collectmultiplemetrics/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bqsr/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bammetrics/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_genotypegvcf/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_dbsnp/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_starfusion/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_postpon/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_prepon/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_indexgvcf/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_applybqsr/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_fq2bam/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_rna-fq2bam/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_haplotypecaller/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bamsort/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_deepvariant/*.deb; dpkg -l | grep parabricks; apt-get install -y --no-install-recommends python3-pip; python3 -m pip install matplotlib;
11/22/2022 3:23 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
NVIDIA_DRIVER_CAPABILITIES=compute,utility
10/27/2022 10:55 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
NVIDIA_VISIBLE_DEVICES=all
10/27/2022 10:55 PM UTC
sha256:602244ba45e93c670bd35e1f2cfc00fd97e05acd45182ccfff27a4084405a09dCOPY
NGC-DL-CONTAINER-LICENSE /
10/27/2022 10:55 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64
10/27/2022 10:55 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10/27/2022 10:55 PM UTC
sha256:f1f4b76f064d865392976df62d32389779b462f8232e1c5acb6d294271cd782cRUN
TARGETARCH=amd64 echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
  echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf
10/27/2022 10:55 PM UTC
sha256:85e82cfdf7b312e62e6923cfeeda567fd97a0fcc5d3b1e1ac845ce5b1de3de28RUN
TARGETARCH=amd64 apt-get update &&
  apt-get install -y --no-install-recommends cuda-cudart-11-7=${NV_CUDA_CUDART_VERSION} ${NV_CUDA_COMPAT_PACKAGE} &&
  ln -s cuda-11.7 /usr/local/cuda &&
  rm -rf /var/lib/apt/lists/*
10/27/2022 10:55 PM UTC
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