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  • NVIDIA
    NVIDIA Parabricks
    Container
    NVIDIA
    NVIDIA Parabricks

    NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    —
    		11/22/2022 3:23 PM UTC
    sha256:8821bb3e5a15228e8c86baa45dfecab88ab94304664873e66dc4393c83e57252RUN
    apt update &&
  apt update --fix-missing &&
  apt -y upgrade
    		11/22/2022 3:23 PM UTC
    sha256:7b27cc0e5494da684e91a38a7d7b69d40209c9dce7ce15fb6c5c587064e82837RUN
    /bin/bash -c apt-get update; apt-get install -y --no-install-recommends ./debian_package/artifact_folder_core/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bam2fq/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_mutectcaller/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_collectmultiplemetrics/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bqsr/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bammetrics/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_genotypegvcf/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_dbsnp/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_starfusion/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_postpon/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_prepon/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_indexgvcf/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_applybqsr/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_fq2bam/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_rna-fq2bam/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_haplotypecaller/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bamsort/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_deepvariant/*.deb; dpkg -l | grep parabricks; apt-get install -y --no-install-recommends python3-pip; python3 -m pip install matplotlib;
    		11/22/2022 3:23 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    NVIDIA_DRIVER_CAPABILITIES=compute,utility
    		10/27/2022 10:55 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    NVIDIA_VISIBLE_DEVICES=all
    		10/27/2022 10:55 PM UTC
    sha256:602244ba45e93c670bd35e1f2cfc00fd97e05acd45182ccfff27a4084405a09dCOPY
    NGC-DL-CONTAINER-LICENSE /
    		10/27/2022 10:55 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64
    		10/27/2022 10:55 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
    		10/27/2022 10:55 PM UTC
    sha256:f1f4b76f064d865392976df62d32389779b462f8232e1c5acb6d294271cd782cRUN
    TARGETARCH=amd64 echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
  echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf
    		10/27/2022 10:55 PM UTC
    sha256:85e82cfdf7b312e62e6923cfeeda567fd97a0fcc5d3b1e1ac845ce5b1de3de28RUN
    TARGETARCH=amd64 apt-get update &&
  apt-get install -y --no-install-recommends cuda-cudart-11-7=${NV_CUDA_CUDART_VERSION} ${NV_CUDA_COMPAT_PACKAGE} &&
  ln -s cuda-11.7 /usr/local/cuda &&
  rm -rf /var/lib/apt/lists/*
    		10/27/2022 10:55 PM UTC