NVIDIA
NVIDIA
NVIDIA Parabricks
Container
NVIDIA
NVIDIA
NVIDIA Parabricks

NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

LayerLabelCreated
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4CONFIG
fb9b84d6d57b95554dce50d7918ede483945f0b040ea420d66aba59f0a30ea8fRUN
apt update &&
  apt update --fix-missing &&
  apt -y upgrade
09/08/2022 1:24 AM UTC
63a79b1f2d300887686aa22bbb99fb6a1178a75902a90a4ecc1f10c98fd99c01RUN
/bin/bash -c apt-get update; apt-get install -y --no-install-recommends ./debian_package/artifact_folder_core/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bam2fq/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_mutectcaller/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_collectmultiplemetrics/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bqsr/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bammetrics/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_genotypegvcf/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_dbsnp/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_starfusion/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_postpon/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_prepon/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_indexgvcf/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_applybqsr/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_fq2bam/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_rna-fq2bam/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_haplotypecaller/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bamsort/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_deepvariant/*.deb; dpkg -l | grep parabricks; apt-get install -y --no-install-recommends python3-pip; python3 -m pip install matplotlib;
09/08/2022 1:24 AM UTC
6bc50d72b9eb6fc57c689a02d6fb50a068d851c6e2feecb6e13e9d57983ea536ENV
NVIDIA_DRIVER_CAPABILITIES=compute,utility
07/11/2022 8:49 PM UTC
501d7ebf1cb454f1688fe43d13ac806d976cdf183538d75e6783951f96a605feENV
NVIDIA_VISIBLE_DEVICES=all
07/11/2022 8:49 PM UTC
f3cc26341cedb78871a33336cb5f804813cc7821a34479216da72e4eedf571dcCOPY
NGC-DL-CONTAINER-LICENSE /
07/11/2022 8:49 PM UTC
d4fe725910addea868234eec85ceea8cb6610ce880fe8cd649ec2ccaee4e0752ENV
LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64
07/11/2022 8:49 PM UTC
ea6ef7a23b5d515989b55c08f96490a182f746ea70af2577b645f1508c4b832dENV
PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07/11/2022 8:49 PM UTC
f14da266b2a203429d31c371b584491c0d170879878c930f4220606635edfad8RUN
TARGETARCH=amd64 echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
  echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf
07/11/2022 8:49 PM UTC
48bf4c5e8fb775a4ed7746295c2459d52dce644190ff88095d3a42563b2b4f92RUN
TARGETARCH=amd64 apt-get update &&
  apt-get install -y --no-install-recommends cuda-cudart-11-2=${NV_CUDA_CUDART_VERSION} ${NV_CUDA_COMPAT_PACKAGE} &&
  ln -s cuda-11.2 /usr/local/cuda &&
  rm -rf /var/lib/apt/lists/*
07/11/2022 8:49 PM UTC