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  • NVIDIA
    NVIDIA Parabricks
    Container
    NVIDIA
    NVIDIA Parabricks

    NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    —
    		09/08/2022 1:24 AM UTC
    sha256:8d88682a5e1dfc9375ea4a4834e5aff43e780f2c6e82ddbec89eabbd5a9800faRUN
    apt update &&
  apt update --fix-missing &&
  apt -y upgrade
    		09/08/2022 1:24 AM UTC
    sha256:a3ac3ab0ee351d7e137a83615b01acb272d3b091c745163fb506cdf7b96c077bRUN
    /bin/bash -c apt-get update; apt-get install -y --no-install-recommends ./debian_package/artifact_folder_core/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bam2fq/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_mutectcaller/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_collectmultiplemetrics/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bqsr/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bammetrics/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_genotypegvcf/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_dbsnp/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_starfusion/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_postpon/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_prepon/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_indexgvcf/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_applybqsr/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_fq2bam/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_rna-fq2bam/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_haplotypecaller/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_bamsort/*.deb &&
  apt-get install -y --no-install-recommends ./debian_package/artifact_folder_deepvariant/*.deb; dpkg -l | grep parabricks; apt-get install -y --no-install-recommends python3-pip; python3 -m pip install matplotlib;
    		09/08/2022 1:24 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    NVIDIA_DRIVER_CAPABILITIES=compute,utility
    		07/11/2022 8:49 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    NVIDIA_VISIBLE_DEVICES=all
    		07/11/2022 8:49 PM UTC
    sha256:3eb73064088b62826e9ea4b1bcbd9b10270f134e45f6436214db7c8ebed6052bCOPY
    NGC-DL-CONTAINER-LICENSE /
    		07/11/2022 8:49 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64
    		07/11/2022 8:49 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
    		07/11/2022 8:49 PM UTC
    sha256:d6949fcf1aef0c0e95826220c5f2731c2909492c994d70707d8c93eb4c815b99RUN
    TARGETARCH=amd64 echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
  echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf
    		07/11/2022 8:49 PM UTC
    sha256:773163705c35e00e6c9cdb84e4e8db9079b8777f8f3f62839ec2008af668f939RUN
    TARGETARCH=amd64 apt-get update &&
  apt-get install -y --no-install-recommends cuda-cudart-11-2=${NV_CUDA_CUDART_VERSION} ${NV_CUDA_COMPAT_PACKAGE} &&
  ln -s cuda-11.2 /usr/local/cuda &&
  rm -rf /var/lib/apt/lists/*
    		07/11/2022 8:49 PM UTC