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  • NVIDIA
    NVIDIA Parabricks
    Container
    NVIDIA
    NVIDIA Parabricks

    NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    —
    		09/12/2024 2:44 AM UTC
    sha256:69fb980be32654aedab62c273a79f9f87d445689ab40ef1a149c16dad2c8e83fRUN
    if test -e /usr/local/parabricks/binaries/bin/collectmultiplemetrics ; then python3 -m pip install matplotlib ; fi
    		09/12/2024 2:44 AM UTC
    sha256:3a7f60eb3df0d0be7645b187539cc4e3ed2e2b51e75430a4bd7e63777b0ebddcRUN
    if test -e /usr/local/parabricks/TiedHash.pm ; then mv /usr/local/parabricks/TiedHash.pm /etc/perl/ ; fi
    		09/12/2024 2:44 AM UTC
    sha256:4efe28e322ed23d85a9aacb3d796b4fb4961a67c5799cd79df7d65d737f52a3bADD
    parabricks/ /usr/local/parabricks/
    		09/12/2024 2:44 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    —
    		09/12/2024 2:43 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    CUFILE_LOGFILE_PATH=/tmp/cufile.log
    		09/12/2024 2:43 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    PATH=/usr/local/parabricks:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
    		09/12/2024 2:43 AM UTC
    sha256:cc726930dd18787e8e007a9ab7ae5a9fee9775432436337baf9cf6b695698946RUN
    CUDA_PACKAGE=-12-3 apt update &&
  apt update --fix-missing &&
  apt -y upgrade
    		09/12/2024 2:43 AM UTC
    sha256:a9e7255a29de646468323d64c1c2861d1251c9b39c37b6affe38d4b10d1abfe2RUN
    CUDA_PACKAGE=-12-3 DEBIAN_FRONTEND=noninteractive apt install --no-install-recommends -y bcftools gds-tools$CUDA_PACKAGE libboost-filesystem-dev libboost-iostreams-dev libboost-program-options-dev libboost-system-dev libbz2-1.0 libcufile-dev$CUDA_PACKAGE libgomp1 libisal2 libjemalloc-dev liblzma5 libtcmalloc-minimal4 perl python3 python3-distlib python3-pip samtools zlib1g
    		09/12/2024 2:43 AM UTC
    sha256:ccebcde3eaaa56c8f563ced8a51496662b5a9d1e719998c4f1a7cfcb69b6b365RUN
    CUDA_PACKAGE=-12-3 apt update &&
  apt update --fix-missing
    		09/12/2024 2:43 AM UTC