NVIDIA
NVIDIA
NVIDIA Parabricks
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NVIDIA
NVIDIA
NVIDIA Parabricks

NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

LayerLabelCreated
06f5f3b5c66a0baf169d828127cd30bbd10a082baa76be008b2a048ce117d68eCONFIG
09/12/2024 2:36 AM UTC
d46d9cc61892d049d4d866433288bc5125c88fe9277bef4f026fdb1488b39b65RUN
DEBIAN_FRONTEND=noninteractive apt purge -y wget
09/12/2024 2:36 AM UTC
3225e9bebfab2e81d6350938989fc62a20eb8d7b8891e5ef5be5e6cbaa0dcb0fRUN
wget https://developer.download.nvidia.com/compute/nvcomp/4.0.0/local_installers/nvcomp-linux-sbsa-4.0.0-cuda12.5.tar.gz -O /tmp/nvcomp-linux-sbsa-4.0.0-cuda12.5.tar.gz &&
  tar -xzf /tmp/nvcomp-linux-sbsa-4.0.0-cuda12.5.tar.gz --directory /tmp &&
  cp --recursive /tmp/nvcomp/lib/* /usr/local/parabricks/binaries/lib &&
  rm -rf /tmp/*
09/12/2024 2:36 AM UTC
4cd590fb175f44d3e571676eb511f76eca11cd385570094d4db7505fcf4adbe7RUN
DEBIAN_FRONTEND=noninteractive apt install --no-install-recommends -y wget
09/12/2024 2:36 AM UTC
65cdd8e91d93b99dd1d02bba125be14808379ba9d838c3e650bdd1571f81e9d7RUN
if test -e /usr/local/parabricks/binaries/bin/collectmultiplemetrics ; then python3 -m pip install matplotlib ; fi
09/12/2024 2:36 AM UTC
6b05f80775e8228923c72b1adb141dc8a8f79cab944f97e04e5aae4dcd058a6dRUN
if test -e /usr/local/parabricks/TiedHash.pm ; then mv /usr/local/parabricks/TiedHash.pm /etc/perl/ ; fi
09/12/2024 2:36 AM UTC
28f17cf195979b0c11bb0360dbbfbdb01932651ee198af80996d8193551c1cebADD
parabricks/ /usr/local/parabricks/
09/12/2024 2:36 AM UTC
b63b5ff17508d93e6f7f399a4b386819acb4f8609d1fc29d2bcae0ee270055b5ENTRYPOINT
09/12/2024 2:35 AM UTC
8a9fccd2568dbfb66756449e48dfd4c130a3763ec0f55022b006072170c1d0d4ENV
CUFILE_LOGFILE_PATH=/tmp/cufile.log
09/12/2024 2:35 AM UTC
414795dbd8a315593d19ab01f5a54ecf5ac466baa4a9d3de741529eb5f9f6234ENV
PATH=/usr/local/parabricks:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09/12/2024 2:35 AM UTC

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