NVIDIA
NVIDIA Parabricks
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NVIDIA
NVIDIA Parabricks

NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    09/12/2024 2:36 AM UTC
    sha256:38a31a80fa0a7e2c5cf08016360f79ef82172263386005bc8a3a9841d00a9694RUN
    DEBIAN_FRONTEND=noninteractive apt purge -y wget
    09/12/2024 2:36 AM UTC
    sha256:ed22a99db49c6e1ac2f6f13279d794e5dff8dd0f25b67ad50527854d4381fab5RUN
    wget https://developer.download.nvidia.com/compute/nvcomp/4.0.0/local_installers/nvcomp-linux-sbsa-4.0.0-cuda12.5.tar.gz -O /tmp/nvcomp-linux-sbsa-4.0.0-cuda12.5.tar.gz &&
      tar -xzf /tmp/nvcomp-linux-sbsa-4.0.0-cuda12.5.tar.gz --directory /tmp &&
      cp --recursive /tmp/nvcomp/lib/* /usr/local/parabricks/binaries/lib &&
      rm -rf /tmp/*
    09/12/2024 2:36 AM UTC
    sha256:264cd5d502eccb3541973a56ffe4e9a246210c73993db90b1599ed512e5d8745RUN
    DEBIAN_FRONTEND=noninteractive apt install --no-install-recommends -y wget
    09/12/2024 2:36 AM UTC
    sha256:a37eaca214f1002536cc51784304567b536c089fe20ca56a89e9f279464bf16cRUN
    if test -e /usr/local/parabricks/binaries/bin/collectmultiplemetrics ; then python3 -m pip install matplotlib ; fi
    09/12/2024 2:36 AM UTC
    sha256:b24521b8a763e5b89ac487b9461073d072f264708cc726a4807bf7b05f37e582RUN
    if test -e /usr/local/parabricks/TiedHash.pm ; then mv /usr/local/parabricks/TiedHash.pm /etc/perl/ ; fi
    09/12/2024 2:36 AM UTC
    sha256:cf1e9840ed20f47af3f22fadbaa134b672a3aacb636012828024805e20382231ADD
    parabricks/ /usr/local/parabricks/
    09/12/2024 2:36 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    09/12/2024 2:35 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    CUFILE_LOGFILE_PATH=/tmp/cufile.log
    09/12/2024 2:35 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    PATH=/usr/local/parabricks:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
    09/12/2024 2:35 AM UTC