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NVIDIA Parabricks
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NVIDIA
NVIDIA
NVIDIA Parabricks

NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

NVIDIA AI Enterprise Supported
LayerLabelCreated
3b3057af022c83c8eff8d4046372cf8c058eb445ad79fe5ea38efea3b3a555d1CONFIG
WorkingDir /root
03/13/2024 1:43 PM UTC
79a9f0fb30d8af61aaf4715d85750d35d5e0a1743650c7488ce69ea4a2fefaeeWORKDIR
/root
03/13/2024 1:43 PM UTC
26e119c5a26c405c0048d6f8c60dfa75c796928ec515f5d6a21550e8fc062b27RUN
DEBIAN_FRONTEND=noninteractive mkdir -p /etc/perl &&
  mv /parabricks/TiedHash.pm /etc/perl/TiedHash.pm
03/13/2024 1:43 PM UTC
4f69e30d52f48e45ca85471e8f76c5525934683f6c269a2094e8b46ce2e4eb22ENV
PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/parabricks
03/13/2024 1:43 PM UTC
d67e6a4b368f0ca2737a394793a47c8957056e27604adffc291126747034228dENV
LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/externals-sbsa/lib:/parabricks/binaries/lib:/parabricks/binaries/deepvariant_libs:/parabricks/binaries/trt_8.6.1.6
03/13/2024 1:43 PM UTC
c85ebacd1b50efc8c8e547434b3736ecf2bc16fc6d8685872cdd53a5ae731b37COPY
/dnabricks_sources/pydeps/package/4.2.0-1-complete/parabricks /parabricks
03/13/2024 1:43 PM UTC
2ec20a6ae15f05f91b280699e51e945f4361b828c089bc913378cc5ac961e2a4COPY
/externals-sbsa /externals-sbsa
03/13/2024 1:43 PM UTC
06985882f8848057f42adc01a572f60a6d8c12a42effe084b7d15c5ef5c427a1RUN
DEBIAN_FRONTEND=noninteractive apt-get update &&
  apt-get install --no-install-recommends -y bcftools python3 python3-distlib python3-pip python3-matplotlib zlib1g libboost-filesystem1.74.0 libboost-program-options1.74.0 libboost-iostreams1.74.0 libboost-system1.74.0 libbz2-1.0 libtcmalloc-minimal4 libisal2 samtools liblzma5 python3 perl libgomp1
03/13/2024 1:31 PM UTC
e18a44e0571622da9be76544f64f0befe47d363d000521775695d9b98746b1b0ENV
TZ=America/New_York
03/13/2024 1:31 PM UTC
5d01737530c4217e0a902489994f3d09cdc24facb5b03ecba6deff88d98af456ARG
DEBIAN_FRONTEND=noninteractive
03/13/2024 1:31 PM UTC

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