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  • NVIDIA
    NVIDIA Parabricks
    Container
    NVIDIA
    NVIDIA Parabricks

    NVIDIA Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    —
    		03/13/2024 1:43 PM UTC
    sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1WORKDIR
    /root
    		03/13/2024 1:43 PM UTC
    sha256:b4bda601b31f7c82eaafd40a84fa331cccd53a60140671e433a9084d8b4c0f4fRUN
    DEBIAN_FRONTEND=noninteractive mkdir -p /etc/perl &&
  mv /parabricks/TiedHash.pm /etc/perl/TiedHash.pm
    		03/13/2024 1:43 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/parabricks
    		03/13/2024 1:43 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/externals-sbsa/lib:/parabricks/binaries/lib:/parabricks/binaries/deepvariant_libs:/parabricks/binaries/trt_8.6.1.6
    		03/13/2024 1:43 PM UTC
    sha256:4ebe6fee9f237c1045e6b40c6307f6d422bdb1d08c5a270045002e5f46d23abbCOPY
    /dnabricks_sources/pydeps/package/4.2.0-1-complete/parabricks /parabricks
    		03/13/2024 1:43 PM UTC
    sha256:ab8a8b53942c88491e5ef5ebb8bbc73a9ddc403a67b59e919b75446b26b9149eCOPY
    /externals-sbsa /externals-sbsa
    		03/13/2024 1:43 PM UTC
    sha256:6a5581b916a3e475068c5f198e2582e252d9eb71fa5a783bf5c4031d60822ee5RUN
    DEBIAN_FRONTEND=noninteractive apt-get update &&
  apt-get install --no-install-recommends -y bcftools python3 python3-distlib python3-pip python3-matplotlib zlib1g libboost-filesystem1.74.0 libboost-program-options1.74.0 libboost-iostreams1.74.0 libboost-system1.74.0 libbz2-1.0 libtcmalloc-minimal4 libisal2 samtools liblzma5 python3 perl libgomp1
    		03/13/2024 1:31 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    TZ=America/New_York
    		03/13/2024 1:31 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ARG
    DEBIAN_FRONTEND=noninteractive
    		03/13/2024 1:31 PM UTC

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