ColabFold
msa-search
Container
ColabFold
msa-search

The Multiple Sequence Alignment (MSA) Search NIM enables protein structure prediction models by providing fast, accurate sequence alignments of a query amino acid sequence against large databases of known proteins.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    ["/bin/bash" "-c" "$SERVER_START_SCRIPT_PATH"]
    06/15/2026 3:04 AM UTC
    sha256:05d0c7fcaa6ea93315cd78348bc8706a1043d6eb36dd242f9fd6fc044d6e9485RUN
    RUN |3 TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple /bin/sh -c touch $SERVER_START_SCRIPT_PATH &&
      chmod a+rx $SERVER_START_SCRIPT_PATH &&
      cat > $SERVER_START_SCRIPT_PATH <<-EOF #!/usr/bin/env bash set -eu # SPDX-FileCopyrightText: Copyright (c) 2024 NVIDIA CORPORATION & AFFILIATES. All rights reserved. # SPDX-License-Identifier: LicenseRef-NvidiaProprietary start_server EOF # buildkit
    06/15/2026 3:04 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    SERVER_START_SCRIPT_PATH=/opt/nim/start_server.sh
    06/15/2026 3:04 AM UTC
    sha256:b7ab1bd074af0c82a1ca0b9f811b62cb99d8c8f94929db9281d27147741e3edeCOPY
    model_manifest.yaml /opt/nim/etc/default/model_manifest.yaml
    06/15/2026 3:04 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4USER
    nvs:1000
    06/15/2026 3:04 AM UTC
    sha256:01d52b3eb991b38b948a0540b97a0359f22c6a187bd5237c16348e4ae86cdbc4RUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple [ -d /etc/ld.so.conf.d ] ||
      mkdir -p /etc/ld.so.conf.d &&
      [ -f /etc/ld.so.conf.d/nvidia.conf ] ||
      touch /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/cuda/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      if command -v ldconfig >/dev/null 2>&1; then ldconfig; fi
    06/15/2026 3:04 AM UTC
    sha256:b3c9c91a809159189f78325d1f51a69d3a22553f6e564039109fec1a404c1358RUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple groupadd --gid 1000 --non-unique nvs &&
      useradd --create-home --shell /usr/sbin/nologin --uid 1000 --non-unique --gid 1000 nvs &&
      chown 1000.1000 $NIM_DIR_PATH
    06/15/2026 3:04 AM UTC
    sha256:86f97e5cfd85f36a9f1a10a9eb7b8a2d4c5b54e328fb57255a60671de2dd2239COPY
    NOTICE /opt/nim
    06/15/2026 3:04 AM UTC
    sha256:40a5e74c823e9a1a6aa0bc333faaf91419f029eb255e70b31a75b1b778846f1cCOPY
    ./LICENSE ./VERSION /opt/nim
    06/15/2026 3:04 AM UTC
    sha256:8093fdb5f71f630d03964ee8d1f98b1faa8d9d49255825c92ca603d1a72714c1COPY
    ./inference.py /opt/nim
    06/15/2026 3:04 AM UTC
    ...