ColabFold
msa-search
Container
ColabFold
msa-search

The Multiple Sequence Alignment (MSA) Search NIM enables protein structure prediction models by providing fast, accurate sequence alignments of a query amino acid sequence against large databases of known proteins.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    ["/bin/bash" "-c" "$SERVER_START_SCRIPT_PATH"]
    12/10/2025 11:57 PM UTC
    sha256:4aa1a112d3105b4deea9e4f41231d25de1e750c01dc9c34b98b8cb92fc1039d3RUN
    RUN |3 TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple /bin/sh -c touch $SERVER_START_SCRIPT_PATH &&
      chmod a+rx $SERVER_START_SCRIPT_PATH &&
      cat > $SERVER_START_SCRIPT_PATH <<-EOF #!/usr/bin/env bash set -eu # SPDX-FileCopyrightText: Copyright (c) 2024 NVIDIA CORPORATION & AFFILIATES. All rights reserved. # SPDX-License-Identifier: LicenseRef-NvidiaProprietary start_server EOF # buildkit
    12/10/2025 11:57 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    SERVER_START_SCRIPT_PATH=/opt/nim/start_server.sh
    12/10/2025 11:57 PM UTC
    sha256:13e3bce71ad881281328c29954eead0a4ba2e569ad82f16f16ec594b93edff77COPY
    model_manifest.yaml /opt/nim/etc/default/model_manifest.yaml
    12/10/2025 11:57 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4USER
    nvs:1000
    12/10/2025 11:57 PM UTC
    sha256:203cea8135909201d6585a754709b47ea52dc283c9fa02ae81c2e8d570a79de3RUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple [ -d /etc/ld.so.conf.d ] ||
      mkdir -p /etc/ld.so.conf.d &&
      [ -f /etc/ld.so.conf.d/nvidia.conf ] ||
      touch /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/cuda/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      if command -v ldconfig >/dev/null 2>&1; then ldconfig; fi
    12/10/2025 11:57 PM UTC
    sha256:57932b65c570af5c09e0e12d3798f11d3cc1fdb7f5316141b464852ee32b1092RUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple groupadd --gid 1000 --non-unique nvs &&
      useradd --create-home --shell /usr/sbin/nologin --uid 1000 --non-unique --gid 1000 nvs &&
      chown 1000.1000 $NIM_DIR_PATH
    12/10/2025 11:56 PM UTC
    sha256:51ba33a59c449b65bfb6153b64429f6c4cc1cd4bd2cbca3a856428d953c26ca4COPY
    NOTICE /opt/nim
    12/10/2025 11:56 PM UTC
    sha256:f8790d6b799a9f6c652f5af671def6673f59a31a52139efbdc4695cd4bb3b153COPY
    ./LICENSE ./VERSION /opt/nim
    12/10/2025 11:56 PM UTC
    sha256:94184c36013c7e21e1fbe764dccf0dbcaeb4550408791341a18d6a4ab7dd2d89COPY
    ./inference.py /opt/nim
    12/10/2025 11:56 PM UTC
    ...

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