ColabFold
msa-search
Container
ColabFold
msa-search

The Multiple Sequence Alignment (MSA) Search NIM enables protein structure prediction models by providing fast, accurate sequence alignments of a query amino acid sequence against large databases of known proteins.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    ["/bin/bash" "-c" "$SERVER_START_SCRIPT_PATH"]
    01/26/2026 11:27 PM UTC
    sha256:8f03cec9add0ca6a286302f940211039b6a5f2d597e3d523d5e092acaf27cab5RUN
    RUN |3 TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple /bin/sh -c touch $SERVER_START_SCRIPT_PATH &&
      chmod a+rx $SERVER_START_SCRIPT_PATH &&
      cat > $SERVER_START_SCRIPT_PATH <<-EOF #!/usr/bin/env bash set -eu # SPDX-FileCopyrightText: Copyright (c) 2024 NVIDIA CORPORATION & AFFILIATES. All rights reserved. # SPDX-License-Identifier: LicenseRef-NvidiaProprietary start_server EOF # buildkit
    01/26/2026 11:27 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    SERVER_START_SCRIPT_PATH=/opt/nim/start_server.sh
    01/26/2026 11:27 PM UTC
    sha256:5af85ebf0672e21b86ebed77de0ca96028297caca723e87e156f3010921eace5COPY
    model_manifest.yaml /opt/nim/etc/default/model_manifest.yaml
    01/26/2026 11:27 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4USER
    nvs:1000
    01/26/2026 11:27 PM UTC
    sha256:80d1dd62155bcb6a8b57f32de1d0002ddbf5ad3fd01ab05844018d66446bbec6RUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple [ -d /etc/ld.so.conf.d ] ||
      mkdir -p /etc/ld.so.conf.d &&
      [ -f /etc/ld.so.conf.d/nvidia.conf ] ||
      touch /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/cuda/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      if command -v ldconfig >/dev/null 2>&1; then ldconfig; fi
    01/26/2026 11:27 PM UTC
    sha256:b07c34b7dd101e9496996e5c3192a1eedcca65e654ede4ff68f9d2ab22f839daRUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple groupadd --gid 1000 --non-unique nvs &&
      useradd --create-home --shell /usr/sbin/nologin --uid 1000 --non-unique --gid 1000 nvs &&
      chown 1000.1000 $NIM_DIR_PATH
    01/26/2026 11:27 PM UTC
    sha256:5fec8465b0aa83305a202393c35af6ddee40bf19e10561931366007c250f4156COPY
    NOTICE /opt/nim
    01/26/2026 11:27 PM UTC
    sha256:48c1d7065554afe3c2c54686dc37ecd74102ae5e10755a0088c81c7c93c3decdCOPY
    ./LICENSE ./VERSION /opt/nim
    01/26/2026 11:27 PM UTC
    sha256:2d4e80defba208822d5e1bb1bebf9f04a9ca9b3c4c5e622c5beec9b361bc3d3aCOPY
    ./inference.py /opt/nim
    01/26/2026 11:27 PM UTC
    ...