ColabFold
msa-search
Container
ColabFold
msa-search

The Multiple Sequence Alignment (MSA) Search NIM enables protein structure prediction models by providing fast, accurate sequence alignments of a query amino acid sequence against large databases of known proteins.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    ["/bin/bash" "-c" "$SERVER_START_SCRIPT_PATH"]
    04/21/2026 6:00 AM UTC
    sha256:f34170765ff16703297962756b3e66436923882aae273be89bcb6e6a2420c209RUN
    RUN |3 TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple /bin/sh -c touch $SERVER_START_SCRIPT_PATH &&
      chmod a+rx $SERVER_START_SCRIPT_PATH &&
      cat > $SERVER_START_SCRIPT_PATH <<-EOF #!/usr/bin/env bash set -eu # SPDX-FileCopyrightText: Copyright (c) 2024 NVIDIA CORPORATION & AFFILIATES. All rights reserved. # SPDX-License-Identifier: LicenseRef-NvidiaProprietary start_server EOF # buildkit
    04/21/2026 6:00 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    SERVER_START_SCRIPT_PATH=/opt/nim/start_server.sh
    04/21/2026 6:00 AM UTC
    sha256:30f71546ec090bf3b8fd8acf61521ad00d75867f09f70616ad01ed59135fbee4COPY
    model_manifest.yaml /opt/nim/etc/default/model_manifest.yaml
    04/21/2026 6:00 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4USER
    nvs:1000
    04/21/2026 6:00 AM UTC
    sha256:95c3ce69ecff26cdeec0bf118a995d401954066a508f897d0616e14854f0d4aaRUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple [ -d /etc/ld.so.conf.d ] ||
      mkdir -p /etc/ld.so.conf.d &&
      [ -f /etc/ld.so.conf.d/nvidia.conf ] ||
      touch /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/cuda/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      if command -v ldconfig >/dev/null 2>&1; then ldconfig; fi
    04/21/2026 6:00 AM UTC
    sha256:2cf7fa24639128b6c3a62646b650e1bb8861f0ed5c4a377b91fcf264d4c22248RUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple groupadd --gid 1000 --non-unique nvs &&
      useradd --create-home --shell /usr/sbin/nologin --uid 1000 --non-unique --gid 1000 nvs &&
      chown 1000.1000 $NIM_DIR_PATH
    04/21/2026 6:00 AM UTC
    sha256:41892cb06e82861a62f94ac090fac32f7de4e42ca44a149f274d0d41fec531caCOPY
    NOTICE /opt/nim
    04/21/2026 6:00 AM UTC
    sha256:73a6e6e28f0b6c0e6b0591c8d4745ca5936964e337ccdd8547cd7d136014acf5COPY
    ./LICENSE ./VERSION /opt/nim
    04/21/2026 6:00 AM UTC
    sha256:973314ac0b8c172dd5c467b6c04b8ebf792df9ede3659bf7d1ee6ccfdd1fee48COPY
    ./inference.py /opt/nim
    04/21/2026 6:00 AM UTC
    ...