ColabFold
msa-search
Container
ColabFold
msa-search

The Multiple Sequence Alignment (MSA) Search NIM enables protein structure prediction models by providing fast, accurate sequence alignments of a query amino acid sequence against large databases of known proteins.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    ["/bin/bash" "-c" "$SERVER_START_SCRIPT_PATH"]
    02/20/2026 1:30 AM UTC
    sha256:f4263d16bc6fc00711861ecc0e7ad4bfb6f17ed192b56bfe9c0d52362333a634RUN
    RUN |3 TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple /bin/sh -c touch $SERVER_START_SCRIPT_PATH &&
      chmod a+rx $SERVER_START_SCRIPT_PATH &&
      cat > $SERVER_START_SCRIPT_PATH <<-EOF #!/usr/bin/env bash set -eu # SPDX-FileCopyrightText: Copyright (c) 2024 NVIDIA CORPORATION & AFFILIATES. All rights reserved. # SPDX-License-Identifier: LicenseRef-NvidiaProprietary start_server EOF # buildkit
    02/20/2026 1:30 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    SERVER_START_SCRIPT_PATH=/opt/nim/start_server.sh
    02/20/2026 1:30 AM UTC
    sha256:d8e9ce1e12e19c4eea54c34b624339e9d9710ed86e0b8e02d4e26cc168339669COPY
    model_manifest.yaml /opt/nim/etc/default/model_manifest.yaml
    02/20/2026 1:30 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4USER
    nvs:1000
    02/20/2026 1:30 AM UTC
    sha256:0a77e211308cb3cc329102dcc8fe622a31e97398bf5b9caa082deeed694d3756RUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple [ -d /etc/ld.so.conf.d ] ||
      mkdir -p /etc/ld.so.conf.d &&
      [ -f /etc/ld.so.conf.d/nvidia.conf ] ||
      touch /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/cuda/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      if command -v ldconfig >/dev/null 2>&1; then ldconfig; fi
    02/20/2026 1:30 AM UTC
    sha256:34c10a05a245cda13e2e0a11dd487876155607d9c83608564b3650e241c3a3bfRUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple groupadd --gid 1000 --non-unique nvs &&
      useradd --create-home --shell /usr/sbin/nologin --uid 1000 --non-unique --gid 1000 nvs &&
      chown 1000.1000 $NIM_DIR_PATH
    02/20/2026 1:30 AM UTC
    sha256:07e779fff2da03c9164a71b9255fe31f59d23f3cb3941b4792c1975a245795d8COPY
    NOTICE /opt/nim
    02/20/2026 1:30 AM UTC
    sha256:b21f409d59902de603501676e438ed1613487226f99099d3533e3a1d962399c1COPY
    ./LICENSE ./VERSION /opt/nim
    02/20/2026 1:30 AM UTC
    sha256:2741028c4c8eab101820b4ab6c2f1203c339d37b34095c37e7e70ac0dbb1b479COPY
    ./inference.py /opt/nim
    02/20/2026 1:30 AM UTC
    ...