ColabFold
msa-search
Container
ColabFold
msa-search

The Multiple Sequence Alignment (MSA) Search NIM enables protein structure prediction models by providing fast, accurate sequence alignments of a query amino acid sequence against large databases of known proteins.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    ["/bin/bash" "-c" "$SERVER_START_SCRIPT_PATH"]
    01/26/2026 11:27 PM UTC
    sha256:8f03cec9add0ca6a286302f940211039b6a5f2d597e3d523d5e092acaf27cab5RUN
    RUN |3 TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple /bin/sh -c touch $SERVER_START_SCRIPT_PATH &&
      chmod a+rx $SERVER_START_SCRIPT_PATH &&
      cat > $SERVER_START_SCRIPT_PATH <<-EOF #!/usr/bin/env bash set -eu # SPDX-FileCopyrightText: Copyright (c) 2024 NVIDIA CORPORATION & AFFILIATES. All rights reserved. # SPDX-License-Identifier: LicenseRef-NvidiaProprietary start_server EOF # buildkit
    01/26/2026 11:27 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    SERVER_START_SCRIPT_PATH=/opt/nim/start_server.sh
    01/26/2026 11:27 PM UTC
    sha256:5af85ebf0672e21b86ebed77de0ca96028297caca723e87e156f3010921eace5COPY
    model_manifest.yaml /opt/nim/etc/default/model_manifest.yaml
    01/26/2026 11:27 PM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4USER
    nvs:1000
    01/26/2026 11:27 PM UTC
    sha256:80d1dd62155bcb6a8b57f32de1d0002ddbf5ad3fd01ab05844018d66446bbec6RUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple [ -d /etc/ld.so.conf.d ] ||
      mkdir -p /etc/ld.so.conf.d &&
      [ -f /etc/ld.so.conf.d/nvidia.conf ] ||
      touch /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/cuda/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      if command -v ldconfig >/dev/null 2>&1; then ldconfig; fi
    01/26/2026 11:27 PM UTC
    sha256:b07c34b7dd101e9496996e5c3192a1eedcca65e654ede4ff68f9d2ab22f839daRUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple groupadd --gid 1000 --non-unique nvs &&
      useradd --create-home --shell /usr/sbin/nologin --uid 1000 --non-unique --gid 1000 nvs &&
      chown 1000.1000 $NIM_DIR_PATH
    01/26/2026 11:27 PM UTC
    sha256:5fec8465b0aa83305a202393c35af6ddee40bf19e10561931366007c250f4156COPY
    NOTICE /opt/nim
    01/26/2026 11:27 PM UTC
    sha256:48c1d7065554afe3c2c54686dc37ecd74102ae5e10755a0088c81c7c93c3decdCOPY
    ./LICENSE ./VERSION /opt/nim
    01/26/2026 11:27 PM UTC
    sha256:2d4e80defba208822d5e1bb1bebf9f04a9ca9b3c4c5e622c5beec9b361bc3d3aCOPY
    ./inference.py /opt/nim
    01/26/2026 11:27 PM UTC
    ...

    NVIDIA uses cookies to improve your experience on our web site. We and our third-party partners also use cookies and other tools to collect and record information you provide as well as information about your interactions with our websites for performance improvement, analytics, and to assist in marketing efforts. By clicking "Accept All", you consent to our use of cookies and other tools as described in our Cookie Policy. You can manage your cookie settings by clicking on "Manage Settings." By continuing to use this site or by clicking one of the buttons below, you agree to our Terms of Service (which contains important waivers). Please see our Privacy Policy for more information on our privacy practices.