ColabFold
msa-search
Container
ColabFold
msa-search

The Multiple Sequence Alignment (MSA) Search NIM enables protein structure prediction models by providing fast, accurate sequence alignments of a query amino acid sequence against large databases of known proteins.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    ["/bin/bash" "-c" "$SERVER_START_SCRIPT_PATH"]
    11/22/2025 4:52 AM UTC
    sha256:d1c3b57c5bc976cac9c9972bab7f18f5f5c996160443bb5166c24f7c64da780aRUN
    RUN |3 TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple /bin/sh -c touch $SERVER_START_SCRIPT_PATH &&
      chmod a+rx $SERVER_START_SCRIPT_PATH &&
      cat > $SERVER_START_SCRIPT_PATH <<-EOF #!/usr/bin/env bash set -eu # SPDX-FileCopyrightText: Copyright (c) 2024 NVIDIA CORPORATION & AFFILIATES. All rights reserved. # SPDX-License-Identifier: LicenseRef-NvidiaProprietary start_server EOF # buildkit
    11/22/2025 4:52 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
    SERVER_START_SCRIPT_PATH=/opt/nim/start_server.sh
    11/22/2025 4:52 AM UTC
    sha256:1dbbcd269c9402b2268392b9b95e26be5aa407ffc73aa68c76d5022548ad0cafCOPY
    model_manifest.yaml /opt/nim/etc/default/model_manifest.yaml
    11/22/2025 4:52 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4USER
    nvs:1000
    11/22/2025 4:52 AM UTC
    sha256:6433a7f99b9220f44c07141eb4ce295a3bd111fb7b1c296bed07377d78442808RUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple [ -d /etc/ld.so.conf.d ] ||
      mkdir -p /etc/ld.so.conf.d &&
      [ -f /etc/ld.so.conf.d/nvidia.conf ] ||
      touch /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      echo "/usr/local/cuda/lib64" >> /etc/ld.so.conf.d/nvidia.conf &&
      if command -v ldconfig >/dev/null 2>&1; then ldconfig; fi
    11/22/2025 4:52 AM UTC
    sha256:8dec8f8cdc73f4aeb1b528d4c382043afc355747441f03d3663bb88149bc049aRUN
    TELEMETRY_MODE=0 TELEMETRY_ENDPOINT=0 PIP_INDEX_URL=https://urm.nvidia.com/artifactory/api/pypi/nv-shared-pypi/simple groupadd --gid 1000 --non-unique nvs &&
      useradd --create-home --shell /usr/sbin/nologin --uid 1000 --non-unique --gid 1000 nvs &&
      chown 1000.1000 $NIM_DIR_PATH
    11/22/2025 4:52 AM UTC
    sha256:b97a389d716833be328d040388ac2add278d2f0a621de42bf1ae598e523b0370COPY
    NOTICE /opt/nim
    11/22/2025 4:52 AM UTC
    sha256:29cbeccbcd9a2fe0bf788f96c570e8bfebca1cdc5be4ba6ba2a3b019dcfe28d2COPY
    ./LICENSE ./VERSION /opt/nim
    11/22/2025 4:52 AM UTC
    sha256:36a4acc5570a2e67ffcbc82c867a7082360c09fa7e96a32cda608040179f9f69COPY
    ./inference.py /opt/nim
    11/22/2025 4:52 AM UTC
    ...