ipd
ProteinMPNN
Container
ipd
ProteinMPNN

Predicts amino acid sequences from 3D structure of proteins.

  • LayerLabelCreated
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4USER
    nvs
    01/08/2025 1:47 AM UTC
    sha256:e178d3c7377711326db86fa8ca165be28c468b5b549daa718d105d261d48b071RUN
    ln -s /opt/nim/benchmark.py /opt/benchmark.py # for backwards compatibilty with docs
    01/08/2025 1:47 AM UTC
    sha256:03db0d11742dd030d7089c6dc4af0d8554c3285859402aeb9e400f5b8c485b1bCOPY
    tests/benchmark.py tests/nim_client.py bionemo-common/nvcf_utils/nvcf_utils.py /opt/nim/
    01/08/2025 1:47 AM UTC
    sha256:507eadad126d1178fee7751c910b74b50be4b78c3dff26972b1b26d1bfc235f5COPY
    service/inference.py service/model_defs.py service/model_utils.py service/nim_service_utils.py /opt/nim/
    01/08/2025 1:47 AM UTC
    sha256:86fd44fee44ae2af9a3707bd27bc4bf1a42a0fb5495ed04c482d74d0df1f2c36RUN
    pip install --no-deps /opt/app_wheels/*
    01/08/2025 1:47 AM UTC
    sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1RUN
    pip uninstall -y python-apt # Even though it is in base image, removing GPL packages makes SWIPAT eaiser
    01/08/2025 1:47 AM UTC
    sha256:936fdac266eb8976d0c42780270f21f5e5a8caa592efcee02ab7ee66a9808dc2RUN
    apt-get autoremove -y --purge libpmi2-0 &&
      rm -rf /usr/local/cuda-12.6/NsightSystems-cli-2024.6.1 &&
      pip uninstall -y onnx tornado Pillow &&
      rm -rf /opt/pytorch/pytorch/third_party/onnx &&
      pip uninstall -y setuptools aiohttp jupyterlab jupyterlab-server jupyterlab_pygments jupyter_client jupyter-tensorboard jupyter_core jupytext
    01/08/2025 1:47 AM UTC
    sha256:737c807cfc81c2155ef7a15e2e576745e1ba960d5515b37290ac86d2f18ab339RUN
    pip install --no-deps /opt/base_wheels/*
    01/08/2025 1:47 AM UTC
    sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
    ["/bin/sh" "-c" "exec \"$SERVER_START_SCRIPT_PATH\""]
    01/08/2025 1:45 AM UTC
    sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1WORKDIR
    /opt/nim
    01/08/2025 1:45 AM UTC
    ...

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