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Nvidia Clara Parabricks indexgvcf

Logo for Nvidia Clara Parabricks indexgvcf
Description
Index a GVCF file.
Publisher
Nvidia
Latest Tag
4.0.0-1
Modified
March 1, 2024
Compressed Size
88.78 MB
Multinode Support
No
Multi-Arch Support
No
4.0.0-1 (Latest) Security Scan Results

Linux / amd64

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This tool creates an index for g.vcf/g.vcf.gz files. The index file name is determined by appending .tbi to the name of the GVCF file being indexed, and is created in the same directory as the index file itself.

For further information visit the indexgvcf help page.

Quick Start

# This command assumes all the inputs are in <INPUT_DIR> and all the outputs go to <OUTPUT_DIR>.
$ docker run --rm --gpus all --volume <INPUT_DIR>:/workdir --volume <OUTPUT_DIR>:/outputdir
    -w /workdir \
    nvcr.io/nvidia/clara/clara-parabricks:<VERSION-TAG> \
    pbrun indexgvcf \
    --input /workdir/${INPUT_GVCF}