Nvidia
Container
Nvidia
Nvidia Clara Parabricks indexgvcfIndex a GVCF file.
This tool creates an index for g.vcf/g.vcf.gz files. The index file name is determined by appending .tbi to the name of the GVCF file being indexed, and is created in the same directory as the index file itself.
For further information visit the indexgvcf help page.
Quick Start
# This command assumes all the inputs are in <INPUT_DIR> and all the outputs go to <OUTPUT_DIR>.
$ docker run --rm --gpus all --volume <INPUT_DIR>:/workdir --volume <OUTPUT_DIR>:/outputdir
-w /workdir \
nvcr.io/nvidia/clara/clara-parabricks:<VERSION-TAG> \
pbrun indexgvcf \
--input /workdir/${INPUT_GVCF}
Publisher
Nvidia
Latest Tag4.0.0-1
UpdatedSeptember 27, 2022 UTC
Compressed Size88.78 MB
Multinode SupportNo
Multi-Arch SupportNo