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Clara Holoscan

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Description

Clara Holoscan is a growing collection of AI frameworks, reference applications, and AI models built for Clara Developer Kits and medical device development, including containers for Metagenomics, Dermatology, Ultrasound, & Streaming Video.

Curator

NVIDIA

Modified

March 1, 2022
Containers
Helm Charts
Models
Resources

What is NVIDIA Clara Holoscan?

The Clara Holoscan SDK runs on the NVIDIA Clara AGX hardware developer kit platform and provides developers with capabilities to build end-to-end streaming workflows for medical imaging. Access to the NVIDIA Clara Holoscan SDK requires an NVIDIA Developer Account.

What is in this Collection?

Clara Holoscan is a growing collection of AI frameworks, reference applications, and AI models built for Clara Developer Kits and medical device development. In this collection, you'll find workflows for Metagenomics, Dermatology, Ultrasound, and Streaming Video, including containers for PyTorch and Tensorflow.

Metagenomics

Clara AGX Metagenomics Assembly is a container that provides tools for genome assembly compiled with support for Clara AGX hardware.

Clara AGX Metagenomics Polish is a container that provides tools for polishing genomics reads compiled with support for Clara AGX hardware.

Clara AGX Metagenomics Classification is a container that provides tools for taxonomic classification compiled with support for Clara AGX hardware.

Dermatology

Clara AGX Dermatology Reference Application is an example of how one can build a simple application around computer vision models on the Clara AGX hardware. The application consists of two computer vision models - the first is a YoloV4 object detection model that looks for moles from a webcam feed, and the second is an EfficientNet B0 classification model trained on the HAM10000 dataset, that classifies a mole as either: Melanoma, Benign, Nevus, or Unknown.

The models were trained by Roujia Wang (roujia.wang@duke.edu)

US4US Ultrasound Research

Clara AGX US4US Container allows the user to turn the Clara AGX Developer Kit into a powerful ultrasound research platform when connected to the us4r-lite ultrasound device. Drivers, libraries, example scripts, sample data, and a Tensorflow environment are provided, allowing the user to create their own ultrasound imaging pipeline in minutes.

Frameworks

For GPU accelerated Deep Learning frameworks, there is multi-arch support for the PyTorch and TensorFlow containers to run on the Clara Holoscan platform.

Hardware Requirements

NVIDIA Clara AGX Developer Kit

The NVIDIA Clara AGX Developer Kit delivers real-time AI and imaging for medical devices. By combining low-powered, NVIDIA Jetson AGX Xavier and RTX GPU with the NVIDIA Clara Holoscan SDK and the NVIDIA EGX stack, it's easy to securely provision and remotely manage fleets of distributed medical instruments.

License

End User License Agreement is included with the products. By pulling and using a container, you accept the terms and conditions of this license.

Technical Support

Use the NVIDIA Developer Forum for Clara Holoscan for questions regarding this Software.