NVIDIA
0.7.2-2010.1
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NVIDIA
Clara Deploy Digital Pathology Nuclei Segmentation PipelineClara Deploy Digital Pathology Nuclei Segmentation Pipeline [Deprecated]
0.7.2-2010.1
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- CD into a directory where pipelines will be stored, e.g.
mkdir -p ~/.clara/pipelines
cd ~/.clara/pipelines
- Use clara pull pipeline to download a pipeline definition:
clara pull pipeline clara_dp_nuclei_seg_pipeline
cd clara_dp_nuclei_seg_pipeline
- Unzip test data - if test data is bundled with the pipeline, run:
unzip app_dp_nuclei_seg-input_v1.zip -d input
- Unzip model data - if model data is bundled with the pipeline, run:
sudo unzip app_dp_nuclei_seg-model_v1.zip -d /clara/common/models/
- Install pipeline:
clara create pipeline -p dp-nuclei-segmentation-pipeline.yaml
- Verify that the pipeline is correctly stored
clara list pipelines
- Verify that the stored pipeline is correct by examining the output of the following command:
kubectl describe pipeline <pipeline ID>