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Clara Deploy Genomics Analysis - De Novo Sequence Assembly
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NVIDIA
Clara Deploy Genomics Analysis - De Novo Sequence Assembly

Clara Deploy Genomics Analysis - De Novo Sequence Assembly [Deprecated]

  1. CD into a directory where pipelines will be stored, e.g.
mkdir -p ~/.clara/pipelines
cd ~/.clara/pipelines
  1. Use clara pull pipeline to download a pipeline definition:
clara pull pipeline clara_denovo_assembly_pipeline
  1. Unzip test data - if test data is bundled with the pipeline, run:
unzip app_cga-input_v1.zip -d input
  1. Install pipeline:
clara create pipeline -p denovo-assembly-gpu.yaml
  1. Verify that the pipeline is correctly stored
clara list pipelines
  1. Verify that the stored pipeline is correct by examining the output of the following command:
clara describe pipeline -p <pipeline ID>

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