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Clara Deploy AI Vnet Segmentation Pipeline [Deprecated]
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NVIDIA
Clara Deploy AI Vnet Segmentation Pipeline [Deprecated]

Clara Deploy AI Vnet Segmentation Pipeline

  1. CD into a directory where pipelines will be stored, e.g.
mkdir -p ~/.clara/pipelines
cd ~/.clara/pipelines
  1. Use clara pull pipeline to download a pipeline definition:
clara pull pipeline clara_ai_vnet_pipeline
  1. Unzip test data - if test data is bundled with the pipeline, run:
unzip app_vnet-input_v1.zip -d input
  1. Unzip and Install model - if the model is bundled with the pipeline, run:
sudo unzip app_vnet-model_v1.zip -d /clara/common/models/
  1. Workaround for 0.5.0-preview-1 release - pipeline definitions in the 0.5.0-preview-1 release does not contain full path to nvcr.io and does not include default pull secret. Edit the pipeline definition file and add the following after
name:
pull-secrets:
  - ngc-clara

Find and prepend all image tags that start with clara/ with nvcr.io/nvstaging/

For example, change

name: my-pipeline
operators:
  - name: clara-hqs
    container:
      image: clara/clara-hqs

To:

name: my-pipeline
pull-secrets:
  - ngc-clara
operators:
  - name: clara-hqs
    container:
      image: nvcr.io/nvidia/clara/clara-hqs
  1. Install pipeline:
clara create pipelines -p ct-vnetseg.yaml
  1. Verify that the pipeline is correctly stored
clara list pipelines
  1. Verify that the stored pipeline is correct by examining the output of the following command:
clara describe pipeline <pipeline ID>

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