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Clara Deploy AI Brain Tumor Pipeline [Deprecated]
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NVIDIA
Clara Deploy AI Brain Tumor Pipeline [Deprecated]

Clara Deploy AI Brain Tumor Pipeline

  1. CD into a directory where pipelines will be stored, as shown in the following example:
mkdir -p ~/.clara/pipelines
cd ~/.clara/pipelines
  1. Use clara pull pipeline to download the pipeline definition:
clara pull pipeline clara_ai_brain_tumor_pipeline
  1. Unzip the test data:
unzip app_braintumor-input_v1.zip
  1. Unzip and install the model:
sudo unzip app_braintumor-model_v1.zip -d /clara/common/models/
  1. Workaround for the 0.5.0-preview-1 release: Pipeline definitions in the 0.5.0-preview-1 release do not contain the full path to nvcr.io or include the default pull secret. To workaround this, edit the pipeline definition file and add the following to the end:
name:
pull-secrets:
  - ngc-clara

Find all image tags that start with clara/ and prepend nvcr.io/nvstaging/ to them.

For example, change

name: my-pipeline
operators:
  - name: clara-hqs
    container:
      image: clara/clara-hqs

to

name: my-pipeline
pull-secrets:
  - ngc-clara
operators:
  - name: clara-hqs
    container:
      image: nvcr.io/nvidia/clara/clara-hqs
  1. Install the pipeline:
clara create pipelines -p brain-tumor-pipeline.yaml
  1. Verify that the pipeline is correctly stored:
clara list pipelines
  1. Verify that the stored pipeline is correct by examining the output of the following command:
clara describe pipeline <pipeline ID>

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