NVIDIA
NVIDIA
Single Cell Examples
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NVIDIA
NVIDIA
Single Cell Examples

Contains example notebooks demonstrating the use of RAPIDS for GPU-accelerated analysis of single-cell sequencing data.

LayerLabelCreated
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4RUN
conda run -n rapids /bin/bash -c #(nop) CMD ["conda" "run" "-n" "rapids" "/bin/bash" "-c" "jupyter-lab \t\t--no-browser \t\t--allow-root \t\t--port=8888 \t\t--ip=0.0.0.0 \t\t--notebook-dir=/workspace/rapids-single-cell-examples/notebooks \t\t--NotebookApp.password=\"\" \t\t--NotebookApp.token=\"\" \t\t--NotebookApp.password_required=False"]
07/19/2022 4:24 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4RUN
conda run -n rapids /bin/bash -c #(nop) ENV PATH=/opt/conda/envs/rapids/bin/:/opt/conda/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07/19/2022 4:24 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4RUN
conda run -n rapids /bin/bash -c #(nop) ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/local/cuda-11.2/compat/
07/19/2022 4:24 PM UTC
sha256:bd4fb066232de6346c7f9fff32ff224eaab8083904dec2ff5f3414de45f2a964RUN
GIT_BRANCH=master conda run -n rapids /bin/bash -c source activate rapids &&
  python3 -m ipykernel install --user --name=RAPIDS
07/19/2022 4:24 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4RUN
conda run -n rapids /bin/bash -c #(nop) SHELL [conda run -n rapids /bin/bash -c]
07/19/2022 4:24 PM UTC
sha256:4af3fa53b98ddd4f72db07eba1fb597a43f6347774f8c2f252ec3dd43522a911RUN
GIT_BRANCH=master /bin/bash -c git checkout ${GIT_BRANCH} &&
  git pull
07/19/2022 4:24 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4RUN
/bin/bash -c #(nop) WORKDIR /workspace/rapids-single-cell-examples
07/19/2022 4:24 PM UTC
sha256:1f6d7a9e7516aa3057c58e07a3162874b23d69bbc296da1497bf0db99d94f01eRUN
GIT_BRANCH=master /bin/bash -c git clone https://github.com/clara-parabricks/rapids-single-cell-examples.git rapids-single-cell-examples
07/19/2022 4:24 PM UTC
sha256:d5f1924dd7add249241d5c03fe65b79fb7ac98f3b45d3c4cee26d1cc94868317RUN
/bin/bash -c #(nop) WORKDIR /workspace
07/19/2022 4:23 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4RUN
/bin/bash -c #(nop) ENV HOME=/workspace
07/19/2022 4:23 PM UTC
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