Nvidia Clara Parabricks mutectcaller | NVIDIA NGC

Nvidia

Nvidia Clara Parabricks mutectcaller

Container

Nvidia

Nvidia Clara Parabricks mutectcaller

Run GPU mutect2 to convert BAM/CRAM to VCF.

Layer	Label		Created
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4	ENTRYPOINT	`—`	09/19/2022 11:08 PM UTC
sha256:1d5d0e75954669d02e409644515200674b8bee67b37c3925b448a6a8266eb2c4	RUN	`apt update && apt update --fix-missing && apt -y upgrade`	09/19/2022 11:08 PM UTC
sha256:6505fd32c93afa947e6f39e5b721fe1a7c57a776e19143eda5f50b05540a77c4	RUN	`bash`	09/19/2022 11:08 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4	ENV	`NVIDIA_DRIVER_CAPABILITIES=compute,utility`	07/11/2022 8:49 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4	ENV	`NVIDIA_VISIBLE_DEVICES=all`	07/11/2022 8:49 PM UTC
sha256:3eb73064088b62826e9ea4b1bcbd9b10270f134e45f6436214db7c8ebed6052b	COPY	`NGC-DL-CONTAINER-LICENSE /`	07/11/2022 8:49 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4	ENV	`LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64`	07/11/2022 8:49 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4	ENV	`PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin`	07/11/2022 8:49 PM UTC
sha256:d6949fcf1aef0c0e95826220c5f2731c2909492c994d70707d8c93eb4c815b99	RUN	`TARGETARCH=amd64 echo "/usr/local/nvidia/lib" >> /etc/ld.so.conf.d/nvidia.conf && echo "/usr/local/nvidia/lib64" >> /etc/ld.so.conf.d/nvidia.conf`	07/11/2022 8:49 PM UTC
sha256:773163705c35e00e6c9cdb84e4e8db9079b8777f8f3f62839ec2008af668f939	RUN	`TARGETARCH=amd64 apt-get update && apt-get install -y --no-install-recommends cuda-cudart-11-2=${NV_CUDA_CUDART_VERSION} ${NV_CUDA_COMPAT_PACKAGE} && ln -s cuda-11.2 /usr/local/cuda && rm -rf /var/lib/apt/lists/*`	07/11/2022 8:49 PM UTC