mambasv

apt-get update &&
  DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends --only-upgrade openssl=3.0.2-0ubuntu1.29 libssl3=3.0.2-0ubuntu1.29 &&
  rm -rf /var/lib/apt/lists/* /opt/conda/lib/python3.14/site-packages/msgpack /opt/conda/lib/python3.14/site-packages/msgpack-1.1.2.dist-info &&
  cp -a /mnt/patch/. / &&
  test "$(dpkg-query -W -f='${Version}' openssl)" = "3.0.2-0ubuntu1.29" &&
  test "$(dpkg-query -W -f='${Version}' libssl3)" = "3.0.2-0ubuntu1.29" &&
  /opt/conda/bin/openssl version | grep -q '^OpenSSL 3.6.4 ' &&
  python -c 'import msgpack, ssl; assert msgpack.__version__ == "1.2.1"; assert ssl.OPENSSL_VERSION.startswith("OpenSSL 3.6.4 ")' &&
  python -m pip check

root

/bin/bash

mambasv

/opt/mambasv

org.opencontainers.image.title=MambaSV org.opencontainers.image.description=Structural variant caller for long-read sequencing using bidirectional Mamba2 org.opencontainers.image.version=v0.1.2 org.opencontainers.image.revision=21bf9f9052cb260adeac9a4328db5e7d2dc10878 org.opencontainers.image.source=https://github.com/clara-parabricks-workflows/MambaSV org.opencontainers.image.created=2026-09-08T00:00:00Z org.opencontainers.image.licenses=Apache-2.0 com.nvidia.mambasv.longcalld.revision=a8e39b787ae8c9b0ffd868e48506d1375dc945a9

MAMBASV_VERSION=v0.1.2 MAMBASV_REVISION=21bf9f9052cb260adeac9a4328db5e7d2dc10878 MAMBASV_SOURCE=https://github.com/clara-parabricks-workflows/MambaSV MAMBASV_CREATED=2026-09-08T00:00:00Z LONGCALLD_REVISION=a8e39b787ae8c9b0ffd868e48506d1375dc945a9 test "${MAMBASV_VERSION}" = "v0.1.2" &&
  test -n "${MAMBASV_REVISION}" &&
  test -n "${MAMBASV_SOURCE}" &&
  test -n "${MAMBASV_CREATED}" &&
  test -n "${LONGCALLD_REVISION}"

LONGCALLD_REVISION

MAMBASV_CREATED