NEMU_RUN_TAG=34259bd3e752fef94045a9a019e4aaf62bd11ce2 chmod 777 -R /workspace/bionemo2/

/usr/local/rustup /usr/local/rustup

/usr/local/cargo /usr/local/cargo

./docs ./docs

./ci/scripts ./ci/scripts

./README.md ./

./scripts ./scripts

VERSION .

NEMU_RUN_TAG=34259bd3e752fef94045a9a019e4aaf62bd11ce2 mkdir -p /workspace/bionemo2/.cache/

RUN |1 NEMU_RUN_TAG=34259bd3e752fef94045a9a019e4aaf62bd11ce2 /bin/sh -c set -eo pipefail uv pip install maturin --no-build-isolation uv pip install --no-build-isolation \
./3rdparty/* \
./sub-packages/bionemo-* \
-r /requirements-cve.txt \
-r /requirements-test.txt # Addressing security scan issue - CVE vulnerability https://github.com/advisories/GHSA-g4r7-86gm-pgqc The package is a # dependency of lm_eval from NeMo requirements_eval.txt. We also remove zstandard, another dependency of lm_eval, which # seems to be causing issues with NGC downloads. See https://nvbugspro.nvidia.com/bug/5149698 uv pip uninstall sqlitedict zstandard rm -rf ./3rdparty rm -rf /tmp/* rm -rf ./sub-packages/bionemo-noodles/target # buildkit