Holoscan Sample App Data for AI-based Bone Scoliosis Segmentation

Overview

This resource contains the spine ultrasound segmentation model for scoliosis visualization and measurement developed by Richard Brown at King's College London, as well as a sample ultrasound video.

Model

The AI model expects a gray-scale image of 256 x 256 and outputs a semantic segmentation of the same size with two channels representing

bone contours with hyperechoic lines (foreground),
hyperechoic acoustic shadow (background).

Note: The provided model is in ONNX format. It will automatically be converted into a TensorRT model (.engine) the first time it is processed by a Holoscan application.

Inputs

INPUT__0 - Graysale ultrasound input image\n
- shape=[3, 256, 256]
- dtype=float32
- range=[0,1]
\n

Outputs

OUTPUT__0 - 2-channel semantic segmentation of ultrasound image (hyperechoic lines, hyperechoic acoustic shadow)\n
- shape=[2, 256, 256]
- dtype=float32
- range=[0,1]
\n

Video Data

The sample data, originating from T. Ungi et al. (2020), is an ultrasound video with a spine identified by the model.

Note: the .avi file must be converted into a GXF tensor file using the convert_video_to_gxf_entities.py script on GitHub to be used with the VideoStreamReplayer Holoscan operator.

License

Refer to LICENSE.md supplied within, and to the license agreement for use of the sample data.

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It will automatically be converted into a TensorRT model (.engine) the first time it is processed by a Holoscan application._\n\n### Inputs\n\n- `INPUT__0` - Graysale ultrasound input image\n - `shape=[3, 256, 256]`\n - `dtype=float32`\n - `range=[0,1]`\n\n### Outputs\n\n- `OUTPUT__0` - 2-channel semantic segmentation of ultrasound image (hyperechoic lines, hyperechoic acoustic shadow)\n - `shape=[2, 256, 256]`\n - `dtype=float32`\n - `range=[0,1]`\n\n## Video Data\n\nThe sample data, originating from [T. Ungi et al. (2020)](https://ieeexplore.ieee.org/document/9034149), is an ultrasound video with a spine identified by the model.\n\n_Note: the .avi file must be converted into a GXF tensor file using the `convert_video_to_gxf_entities.py` script on [GitHub](https://github.com/nvidia-holoscan/holoscan-sdk/tree/main/scripts#convert_video_to_gxf_entitiespy) to be used with the `VideoStreamReplayer` Holoscan operator._\n\n## License\n\nRefer to `LICENSE.md` supplied within, and to the [license agreement](https://developer.nvidia.com/clara-holoscan-EULA) for use of the sample data.","displayName","Ultrasound Sample App Data",["D",1722540831536],"publisher","NVIDIA","latestVersion","versions","collectionCounts","imageUrl","/api/image/nvidia/clara-holoscan/resources/holoscan_ultrasound_sample_data","rawImageUrl","canGuestDownload","latestVersionSizeInBytes","licenseTerms","isMultinodeEnabled","isMultiArchitecture","bias","explainability","privacy","safetyAndSecurity","featureLabels",[],"displayLabels",[],"policyLabels",[],"systemLabels",[],"products",[],"hasNimMetadata",{"_125":1430,"_127":1431},"ngcApps",[1383],"csaApiBaseUrl","https://www.nvidia.com/ai-agents/csa-agent/dcsm","datadogRum",{"_1365":1366,"_1367":1368,"_1369":1370,"_1371":1372,"_1373":268,"_152":292,"_1374":1375,"_1363":56,"_1376":104,"_1377":104,"_1378":1379,"_1380":104,"_1381":1382},"amplitude",{"_1361":1362,"_1363":56,"_963":-7,"_1364":31},"disableJs","environment","prod","featureFlagsBlob","JTdCJTIydGVzdEZsYWclMjIlM0FmYWxzZSUyQyUyMnNob3dTZWFyY2hMYWJlbFNldEZpbHRlcnMlMjIlM0FmYWxzZSUyQyUyMmNoaW5hTmltRGlzdHJpYnV0b3JzUmVkZXNpZ24lMjIlM0F0cnVlJTJDJTIyZW5hYmxlQ3NhV2lkZ2V0JTIyJTNBZmFsc2UlMkMlMjJlbmFibGVQcm9kdWN0R3JvdXBpbmdCeVN1YnNjcmlwdGlvbiUyMiUzQWZhbHNlJTJDJTIyY29udGFpbmVyU2Nhbm5pbmdSZWRlc2lnbk0xJTIyJTNBZmFsc2UlN0Q=","featureFlagsGuarded","isDevLikeEnv","isPlaywright","isMobileDevice","categorizedOrgs",{"_1355":1356,"_1357":1358,"_1359":1360},"currentOrgContext","currentContextRoles",[],"enterpriseOrgs",[],"locale","en","ngcApiOrigin","ngcHelmOrigin","origin","https://catalog.ngc.nvidia.com","usesMocks","theme","year",2026,"1.4.0","defaultSearchSuggestions",{"_1238":195,"_1239":1240,"_1241":1242,"_1243":1244},"announcements",[],"consentState",{"_329":1228,"_1229":31,"_1230":31,"_1231":104,"_1232":1233},"consentConfig",{"_311":312,"_313":314,"_315":316,"_317":318,"_319":320,"_321":322,"_323":324,"_325":326,"_327":328,"_329":330},"showContactAdmin",[],[],[305,306,307,308,309,310],{"_45":59,"_47":70,"_49":61,"_51":62,"_53":71,"_55":56},{"_45":59,"_47":68,"_49":61,"_51":62,"_53":69,"_55":56},{"_45":59,"_47":66,"_49":61,"_51":62,"_53":67,"_55":56},{"_45":59,"_47":60,"_49":120,"_51":-5,"_53":-5,"_55":56},{"_45":57,"_47":58,"_49":120,"_51":-5,"_53":-5,"_55":56},{"_45":46,"_47":48,"_49":120,"_51":-5,"_53":-5,"_55":56},"mainInfoText","We and our third-party partners (including social media, advertising, and analytics partners) use cookies and other tracking technologies to collect, store, monitor, and process certain information about you when you visit our website. 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Name	Size	Updated	Actions
LICENSE.md	302 B	August 1, 2024 UTC	curl wget Download
NVIDIA-Clara-Holoscan-SDK-EULA.pdf	155.83 KB	August 1, 2024 UTC	curl wget Download
ultrasound_256x256.avi	884.37 KB	August 1, 2024 UTC	curl wget Download
us_unet_256x256_nhwc.onnx	2.02 MB	August 1, 2024 UTC	curl wget Download