Description

Download pre-configured setup files to quick launch a Clara COVID-19 CT Scan Classification model on Azure Machine Learning and fine-tune it with a reference dataset using NGC-AzureML Quick Launch Toolkit. azureml-ngc-tools is a CLI toolkit that enables you to launch a fully setup Jupyter notebook environment on AzureML with a combination of NGC assets pre-installed.

These ready-to-use config files work seamlessly with the NGC-AzureML Quick Launch CLI Toolkit (azureml-ngc-tools) to provide you direct access to a fully setup and optimally configured Azure Machine Learning environment with the Clara Train SDK container and the additional resources required for this example, pre-installed for you.

The two ready-to-use files are:

\n
azure_config.json: Defines the most optimal Azure environment setup for this use-case. Simply insert your Azure credentials in the indicated fields and use right away.
\n
\n
ngc_config.json: Pre-installs the Clara Train SDK, a pre-trained COVID-19 CT Scan Classification model (developed in collaboration with the NIH), and ready-to-use code to fine-tune the pre-trained model with a custom dataset on your AzureML environment. No modifications are required; use this file as is.
\n

Usage Instructions

After inserting your Azure credentials in the azure_config.json file downloaded from here, quick launch a ready-to-use Jupyter notebook on AzureML with the following bash commands:

pip install azureml-ngc-tools\n\nazureml-ngc-tools --login azure_config.json --app ngc_config.json\n

Disclaimer

The ready-to-use config files, the NGC-AzureML Quick Launch Toolkit (azureml-ngc-tools) and example code was developed by NVIDIA. It is based on a segmentation and classification model developed by NVIDIA researchers in conjunction with the NIH.

The Software is for Research Use Only. Software’s recommendation should not be solely or primarily relied upon to diagnose or treat COVID-19 by a Healthcare Professional. This research use only software has not been cleared or approved by FDA or any regulatory agency.

License

The config files listed here when used with the NGC-AzureML Quick Launch CLI toolkit (azureml-ngc-tools) uses the Clara Train SDK which is to be used in accordance with the End User License Agreement included with it. Licenses are also available along with the model application zip file. By pulling and using the Clara Train SDK container and downloading models, you accept the terms and conditions of these licenses.

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Simply insert your Azure credentials in the indicated fields and use right away.\n\n2. **ngc_config.json**: Pre-installs the [Clara Train SDK](https://ngc.nvidia.com/catalog/containers/nvidia:clara-train-sdk), a [pre-trained COVID-19 CT Scan Classification model](https://ngc.nvidia.com/catalog/models/nvidia:med:clara_train_covid19_3d_ct_classification) (developed in collaboration with the NIH), and ready-to-use code to fine-tune the pre-trained model with a custom dataset on your AzureML environment. No modifications are required; use this file as is.\n\n\n# Usage Instructions\n\n\n\nAfter inserting your Azure credentials in the azure_config.json file downloaded from here, quick launch a ready-to-use Jupyter notebook on AzureML with the following bash commands:\n\n\n```\npip install azureml-ngc-tools\n\nazureml-ngc-tools --login azure_config.json --app ngc_config.json\n```\n\n# Disclaimer\n\nThe ready-to-use config files, the NGC-AzureML Quick Launch Toolkit (azureml-ngc-tools) and example code was developed by NVIDIA. It is based on a segmentation and classification model developed by NVIDIA researchers in conjunction with the NIH.\n\nThe Software is for Research Use Only. Software’s recommendation should not be solely or primarily relied upon to diagnose or treat COVID-19 by a Healthcare Professional. This research use only software has not been cleared or approved by FDA or any regulatory agency.\n\n\n# License\n\nThe config files listed here when used with the NGC-AzureML Quick Launch CLI toolkit (azureml-ngc-tools) uses the Clara Train SDK which is to be used in accordance with the [End User License Agreement](https://developer.download.nvidia.com/assets/Clara/Downloads/Secure/NVIDIA%20Clara%20SDK%20License_13_Mar_2020.pdf?9XOnFv7FDoWGfmyHmUKIDLhBkwBfu7_g_6G_iwNnn_yX5c0CW5GpgNhUW9DGF3ylBjxiC7GeY1j_virDCDqeqBWLowS284jacieajjALC8kJU9vGn7ot6dary-wwNEXhLfWMrlp-y41a89RGMDPrCq9M4Qt43aoB8NEXTVfcwy0LQk7vFK6MUOaNIQ) included with it. Licenses are also available along with the model application zip file. 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