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KTH Royal Institute of Technology
GROMACS
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KTH Royal Institute of Technology
GROMACS

GROMACS is a popular molecular dynamics application used to simulate proteins and lipids.

LayerLabelCreated
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/cuda-13.0/bin LD_LIBRARY_PATH=/usr/local/fftw/lib:/usr/local/fftw/lib::/usr/local/cuda-13.0/lib64 CUDA_VERSION=13.0.2 CUDA_HOME=/usr/local/cuda NVIDIA_VISIBLE_DEVICES=all NVIDIA_DRIVER_CAPABILITIES=compute,utility
08/18/2026 2:40 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
["/usr/bin/nventry" "-build_base_dir=/usr/local/gromacs" "-build_default=arm_neon_asimd"]
08/18/2026 2:40 PM UTC
sha256:bbb7b2b33aa9a3229f0169be5758a13a19e1eee2104154ea0aeaacabc491bc3dCOPY
/nventry /usr/bin/nventry
08/18/2026 2:40 PM UTC
sha256:24c3370a41e059ba77da4199c52ff2518bdede31e5c96f0ba6b4b48dc5582aa9RUN
rsync -av --mkpath --include '*' /var/tmp/sailor-solve/specgromacs/destdir/ /
08/18/2026 2:40 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
LD_LIBRARY_PATH=/usr/local/fftw/lib:/usr/local/fftw/lib: LANG=en_US.UTF-8 LC_CTYPE=C
08/18/2026 2:40 PM UTC
sha256:f4b5b90affc54611a840e1ae4adfc0b5d2e8f71f639518354e91884c8e183477RUN
apt-get update &&
  DEBIAN_FRONTEND=noninternactive apt-get install -y --no-install-recommends cuda-compat-13-0=580.95.05-0ubuntu1 cuda-cudart-13-0=13.0.96-1 cuda-profiler-api-13-0=13.0.85-1 cuda-toolkit-13-0-config-common=13.0.96-1 cuda-toolkit-13-config-common=13.3.29-1 cuda-toolkit-config-common=13.3.29-1 libcufft-13-0=12.0.0.61-1 &&
  rm -rf /var/lib/apt/lists/*
08/18/2026 2:40 PM UTC
sha256:b0f0c989d90911e6a60bc3049518e567e6894202c9fce598eb9665c09ec6e16cRUN
apt-get update &&
  DEBIAN_FRONTEND=noninternactive apt-get install -y --no-install-recommends /var/tmp/sailor-solve/debs/cuda-keyring_1.1-1_all.deb &&
  rm -rf /var/lib/apt/lists/*
08/18/2026 2:39 PM UTC
sha256:9db08327d2c8618b9e4fabd8b0b561edbe9e0dce7cd99a3a7573c987d3ede1d8RUN
mkdir -p /var/tmp/sailor-solve/debs &&
  cd /var/tmp/sailor-solve/debs &&
  curl -f -L -O https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/sbsa/cuda-keyring_1.1-1_all.deb
08/18/2026 2:39 PM UTC
sha256:715d58482cf216cee62d73f7c922739dd372d3db8ba0202f4b890b0ee3f14a23RUN
rsync -av --mkpath --include '*' /var/tmp/sailor-solve/specfftw3/destdir/ /
08/18/2026 2:39 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
LD_LIBRARY_PATH=/usr/local/fftw/lib:
08/18/2026 2:22 PM UTC