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Kipoi
kipoi
Container
Kipoi
kipoi

Kipoi (pronounce: kípi; from the Greek κήποι: gardens) is an API and a repository of ready-to-use trained models for genomics. It currently contains 2131 different models, covering canonical predictive tasks in transcriptional and post-transcriptional gene regulation. Kipoi's API is implemented as a python package (github.com/kipoi/kipoi) and it is also accessible from the command line or R.

LayerLabelCreated
sha256:50dab49bed534e5cf874ad2d915938ff43847465026cc112cadb2e266a484838WORKDIR
/host_pwd
05/16/2019 3:34 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENTRYPOINT
/etc/entrypoint.sh
05/16/2019 3:34 PM UTC
sha256:93f9cd5c6da305d7c2a66d13bcbbb41b3a25935916ba59fdcb4f429242a198c4COPY
multi:441ee050983cc392cfca9f5d093566362f0f86269eaa63d3a0935dc02bd21a38 in /usr/src/
05/16/2019 3:34 PM UTC
sha256:066f056f0de20809250dccf935342ca9500d712615df93ff1da84d1688245332RUN
conda init bash &&
  echo "source activate kipoi-py3-keras1.2" > ~/.bashrc &&
  /bin/echo -e '#!/bin/bash -l\n' 'exec "$@"\n' > /etc/entrypoint.sh &&
  chmod a+x /etc/entrypoint.sh
05/16/2019 3:27 PM UTC
sha256:2e3aa1b828c6d019bb75eaa482ebfb26e8a4151d60b99e96749fea4d0341af9cCOPY
dir:f67be1f0756971126b9ef89b9efe28905155ee9ff12dcca084a5b22bf91e0576 in /opt/conda
05/16/2019 3:27 PM UTC
sha256:06d393510f476f279e3ace8c6d5d26c80d01cb3bf87671a028e11463dacc8ef2RUN
apt-get update -y &&
  DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends git &&
  rm -rf /var/lib/apt/lists/*
05/16/2019 3:26 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/opt/conda/lib/python3.6/site-packages:/usr/local/nvidia/lib:/usr/local/nvidia/lib64 PATH=/opt/conda/envs/kipoi-dev/bin:/opt/conda/bin/:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin PYTHON_VERSION=3.6
05/16/2019 3:26 PM UTC
sha256:741c9b69279802f4e4a3cb3c93f14003df0acb1e10d8667f631d65a8f0beae72RUN
apt-get update &&
  apt-get install -y --no-install-recommends libcudnn6=$CUDNN_VERSION-1+cuda8.0 &&
  rm -rf /var/lib/apt/lists/*
05/14/2019 7:08 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4LABEL
com.nvidia.cudnn.version=6.0.21
05/14/2019 7:06 PM UTC
sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4ENV
CUDNN_VERSION=6.0.21
05/14/2019 7:06 PM UTC

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