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Clara Parabricks

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Description

Clara Parabricks is a collection of software tools and notebooks for next generation sequencing, including short- and long-read applications. These tools are designed to be scalable, generating highly accurate results in an accelerated compute environmen

Curator

NVIDIA

Modified

July 15, 2021
Containers
Helm Charts
Models
Resources

What is NVIDIA Clara Parabricks Collection?

Clara Parabricks is a collection of software tools and notebooks for next generation sequencing, including short- and long-read applications. These tools are designed to be scalable, generating highly accurate results in an accelerated compute environment and support DNA, RNA, and single cell workflows that start with basecalling and extend through tertiary analysis.

Getting Started and Licenses

For Getting Started instructions and licenses, please check out each individual asset below.

What is in this Collection?

  1. Clara Parabricks Container is a software suite for performing secondary analysis of next generation sequencing (NGS) DNA data. A major benefit of Parabricks is that it is designed to deliver results at blazing fast speeds by utilizing NVIDIA GPU acceleration!
  2. AtacWorks resource is a deep learning toolkit for coverage track denoising and peak calling from low-coverage or low-quality ATAC-seq data.
  3. Single Cell Analysis resource are notebooks demonstrating GPU-accelerated analysis of single-cell sequencing data.

Hardware and Driver Requirements

For Clara Parabricks Container, please see Parabricks Quick Start Guide.

For models and AtacWorks, please see Atac Works resource.

For Single Cell Analysis, please see Single Cell resource.

Technical Support

Use the NVIDIA Devtalk forum for Parabricks for questions regarding this Software. You can also reach out to us via email.