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Nvidia Clara Parabricks postpon

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Description

Annotate variants based on a PON file.

Publisher

Nvidia

Latest Tag

4.0.0-1

Modified

November 1, 2022

Compressed Size

88.83 MB

Multinode Support

No

Multi-Arch Support

No

4.0.0-1 (Latest) Scan Results

Linux / amd64

Annotate variants based on a PON file and modify the "INFO" field of the input VCF file. This is the post process step of using --pon in mutect.

For further information visit the postpon help page.

Quick Start

# This command assumes all the inputs are in <INPUT_DIR> and all the outputs go to <OUTPUT_DIR>.
$ docker run --rm --gpus all --volume <INPUT_DIR>:/workdir --volume <OUTPUT_DIR>:/outputdir
    -w /workdir \
    nvcr.io/nvidia/clara/clara-parabricks:<VERSION-TAG> \
    pbrun postpon \
    --in-vcf /workdir/${INPUT_VCF} \
    --in-pon-file /workdir/${INPUT_PON_VCF} \
    --out-vcf /outputdir/${OUTPUT_VCF}