NGC | Catalog
CatalogContainersNvidia Clara Parabricks indexgvcf

Nvidia Clara Parabricks indexgvcf

For copy image paths and more information, please view on a desktop device.
Logo for Nvidia Clara Parabricks indexgvcf

Description

Index a GVCF file.

Publisher

Nvidia

Latest Tag

4.0.0-1

Modified

November 1, 2022

Compressed Size

88.78 MB

Multinode Support

No

Multi-Arch Support

No

4.0.0-1 (Latest) Scan Results

Linux / amd64

This tool creates an index for g.vcf/g.vcf.gz files. The index file name is determined by appending .tbi to the name of the GVCF file being indexed, and is created in the same directory as the index file itself.

For further information visit the indexgvcf help page.

Quick Start

# This command assumes all the inputs are in <INPUT_DIR> and all the outputs go to <OUTPUT_DIR>.
$ docker run --rm --gpus all --volume <INPUT_DIR>:/workdir --volume <OUTPUT_DIR>:/outputdir
    -w /workdir \
    nvcr.io/nvidia/clara/clara-parabricks:<VERSION-TAG> \
    pbrun indexgvcf \
    --input /workdir/${INPUT_GVCF}