Clara AGX Metagenomics Polish

This container is deprecated. It was released as part of the Clara Holoscan SDK v0.1 and will no longer be compatible with Clara Holoscan SDK v0.2.

What is Clara AGX Metagenomics Polish?

The Clara AGX Metagenomics Polish container provides tools for polishing genomics reads compiled with support for ARM and AGX hardware.

The current latest software versions include:

Package	Version
Medaka	1.4.3

How to Run

Packages are compiled and stored in the /opt/ directory.

Using Medaka

Medaka is shared in a python virtual environment located in /opt/medaka/.

To run the container with data located on your host, you will need to use docker bind mounts: https://docs.docker.com/storage/bind-mounts/

Please refer to the Medaka documentation for further instructions.

Requirements

• Jetpack 4.5 or later.
• Clara AGX Developer Kit for GPU acceleration.

License

Licenses are available and can be viewed in the container. By pulling and using the container, you accept the terms and conditions of these licenses.

Suggested Reading

For documentation, SDK, and how to get a Clara Developer Kit: https://developer.nvidia.com/clara-holoscan-sdk

Use the NVIDIA Devtalk forum for questions regarding this Release: https://forums.developer.nvidia.com/c/healthcare/clara-holoscan-sdk/